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Mutant Information

Mutant Name	FN3804-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3804-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25771976 G-A Hetero INTERGENIC
SBS Chr2 2232285 T-C Hetero INTERGENIC
SBS Chr2 20207401 C-A Homo INTERGENIC
SBS Chr3 7134448 T-C Hetero INTRON
SBS Chr3 18638707 C-T Hetero INTERGENIC
SBS Chr3 31515358 C-A Hetero INTERGENIC
SBS Chr4 15175945 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g072900
SBS Chr4 15175946 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g072900
SBS Chr4 16203756 G-A Hetero INTERGENIC
SBS Chr4 17649623 G-A Hetero INTRON
SBS Chr4 21770354 A-T Hetero INTERGENIC
SBS Chr4 26761254 T-A Hetero INTERGENIC
SBS Chr4 28916902 C-T Hetero INTERGENIC
SBS Chr4 31067228 C-T Hetero UTR_3_PRIME
SBS Chr5 12261300 G-C Hetero INTERGENIC
SBS Chr5 15603363 C-A Hetero INTERGENIC
SBS Chr6 26052725 A-T Hetero INTRON
SBS Chr7 939391 C-A Hetero INTERGENIC
SBS Chr7 10904933 A-G Hetero INTERGENIC
SBS Chr7 11007167 G-A Hetero INTERGENIC
SBS Chr7 16432741 G-T Hetero INTERGENIC
SBS Chr7 17238569 A-G Hetero INTERGENIC
SBS Chr7 18042318 C-T Hetero INTRON
SBS Chr7 20409571 C-T Hetero INTERGENIC
SBS Chr9 5667419 T-C Homo UTR_3_PRIME
SBS Chr9 10316787 G-A Hetero INTERGENIC
SBS Chr9 10319825 G-T Hetero STOP_GAINED OsKitaake09g063700
SBS Chr9 10319826 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g063700
SBS Chr9 11648384 G-T Hetero INTERGENIC
SBS Chr9 16112024 A-G Hetero INTERGENIC
SBS Chr9 16388785 T-A Homo INTERGENIC
SBS Chr9 16388792 G-C Homo INTERGENIC
SBS Chr9 21088535 G-C Hetero INTERGENIC
SBS Chr10 4102312 G-A Homo INTERGENIC
SBS Chr11 13432730 G-C Hetero INTERGENIC
SBS Chr11 21315008 G-A Hetero INTERGENIC
SBS Chr11 29139407 G-T Hetero INTERGENIC
SBS Chr12 1069925 A-T Homo NON_SYNONYMOUS_CODING OsKitaake12g016100
SBS Chr12 2261116 A-C Homo INTRON
SBS Chr12 11816881 T-A Homo INTERGENIC
SBS Chr12 24908602 C-T Hetero INTERGENIC

Deletions: 35

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 627523 627529 6
Deletion Chr8 2062165 2062168 3
Deletion Chr7 3015317 3015324 7
Deletion Chr10 4083572 4083594 22
Deletion Chr10 5225043 5225058 15
Deletion Chr8 5778115 5778123 8
Deletion Chr2 6364001 6443000 78999 9
Deletion Chr2 7922567 7922568 1
Deletion Chr11 8241510 8241516 6
Deletion Chr6 9773693 9773695 2
Deletion Chr1 9848552 9848553 1
Deletion Chr9 12024598 12024604 6 OsKitaake09g076900
Deletion Chr9 12250381 12250383 2
Deletion Chr5 12672001 12681000 8999
Deletion Chr7 13468189 13468193 4
Deletion Chr2 15591218 15591219 1
Deletion Chr9 17047189 17047201 12 OsKitaake09g126300
Deletion Chr4 18474201 18474203 2
Deletion Chr8 18893766 18893776 10
Deletion Chr11 19125001 19144000 18999 2
Deletion Chr10 19550623 19550624 1
Deletion Chr11 20023386 20023387 1
Deletion Chr5 21146073 21146085 12
Deletion Chr10 22142001 22188000 45999 7
Deletion Chr11 23077478 23077484 6
Deletion Chr7 23121814 23121815 1
Deletion Chr11 24159505 24159514 9
Deletion Chr1 25177737 25177739 2
Deletion Chr11 25715055 25715058 3
Deletion Chr8 25846931 25846938 7
Deletion Chr6 26059979 26059998 19
Deletion Chr12 26594706 26594710 4
Deletion Chr3 27449689 27449691 2
Deletion Chr3 34609703 34609707 4
Deletion Chr3 35977384 35977412 28 OsKitaake03g396900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25771976	G-A	Hetero	INTERGENIC
SBS	Chr2	2232285	T-C	Hetero	INTERGENIC
SBS	Chr2	20207401	C-A	Homo	INTERGENIC
SBS	Chr3	7134448	T-C	Hetero	INTRON
SBS	Chr3	18638707	C-T	Hetero	INTERGENIC
SBS	Chr3	31515358	C-A	Hetero	INTERGENIC
SBS	Chr4	15175945	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g072900
SBS	Chr4	15175946	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g072900
SBS	Chr4	16203756	G-A	Hetero	INTERGENIC
SBS	Chr4	17649623	G-A	Hetero	INTRON
SBS	Chr4	21770354	A-T	Hetero	INTERGENIC
SBS	Chr4	26761254	T-A	Hetero	INTERGENIC
SBS	Chr4	28916902	C-T	Hetero	INTERGENIC
SBS	Chr4	31067228	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	12261300	G-C	Hetero	INTERGENIC
SBS	Chr5	15603363	C-A	Hetero	INTERGENIC
SBS	Chr6	26052725	A-T	Hetero	INTRON
SBS	Chr7	939391	C-A	Hetero	INTERGENIC
SBS	Chr7	10904933	A-G	Hetero	INTERGENIC
SBS	Chr7	11007167	G-A	Hetero	INTERGENIC
SBS	Chr7	16432741	G-T	Hetero	INTERGENIC
SBS	Chr7	17238569	A-G	Hetero	INTERGENIC
SBS	Chr7	18042318	C-T	Hetero	INTRON
SBS	Chr7	20409571	C-T	Hetero	INTERGENIC
SBS	Chr9	5667419	T-C	Homo	UTR_3_PRIME
SBS	Chr9	10316787	G-A	Hetero	INTERGENIC
SBS	Chr9	10319825	G-T	Hetero	STOP_GAINED	OsKitaake09g063700
SBS	Chr9	10319826	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g063700
SBS	Chr9	11648384	G-T	Hetero	INTERGENIC
SBS	Chr9	16112024	A-G	Hetero	INTERGENIC
SBS	Chr9	16388785	T-A	Homo	INTERGENIC
SBS	Chr9	16388792	G-C	Homo	INTERGENIC
SBS	Chr9	21088535	G-C	Hetero	INTERGENIC
SBS	Chr10	4102312	G-A	Homo	INTERGENIC
SBS	Chr11	13432730	G-C	Hetero	INTERGENIC
SBS	Chr11	21315008	G-A	Hetero	INTERGENIC
SBS	Chr11	29139407	G-T	Hetero	INTERGENIC
SBS	Chr12	1069925	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g016100
SBS	Chr12	2261116	A-C	Homo	INTRON
SBS	Chr12	11816881	T-A	Homo	INTERGENIC
SBS	Chr12	24908602	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	627523	627529	6
Deletion	Chr8	2062165	2062168	3
Deletion	Chr7	3015317	3015324	7
Deletion	Chr10	4083572	4083594	22
Deletion	Chr10	5225043	5225058	15
Deletion	Chr8	5778115	5778123	8
Deletion	Chr2	6364001	6443000	78999	9
Deletion	Chr2	7922567	7922568	1
Deletion	Chr11	8241510	8241516	6
Deletion	Chr6	9773693	9773695	2
Deletion	Chr1	9848552	9848553	1
Deletion	Chr9	12024598	12024604	6	OsKitaake09g076900
Deletion	Chr9	12250381	12250383	2
Deletion	Chr5	12672001	12681000	8999
Deletion	Chr7	13468189	13468193	4
Deletion	Chr2	15591218	15591219	1
Deletion	Chr9	17047189	17047201	12	OsKitaake09g126300
Deletion	Chr4	18474201	18474203	2
Deletion	Chr8	18893766	18893776	10
Deletion	Chr11	19125001	19144000	18999	2
Deletion	Chr10	19550623	19550624	1
Deletion	Chr11	20023386	20023387	1
Deletion	Chr5	21146073	21146085	12
Deletion	Chr10	22142001	22188000	45999	7
Deletion	Chr11	23077478	23077484	6
Deletion	Chr7	23121814	23121815	1
Deletion	Chr11	24159505	24159514	9
Deletion	Chr1	25177737	25177739	2
Deletion	Chr11	25715055	25715058	3
Deletion	Chr8	25846931	25846938	7
Deletion	Chr6	26059979	26059998	19
Deletion	Chr12	26594706	26594710	4
Deletion	Chr3	27449689	27449691	2
Deletion	Chr3	34609703	34609707	4
Deletion	Chr3	35977384	35977412	28	OsKitaake03g396900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes