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| Mutant Information |
|---|
| Mutant Name | FN3805-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3805-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 16
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10576556 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25866460 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 44189479 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 19636043 | C-G | Homo | INTRON | |
| SBS | Chr5 | 29605035 | C-T | Hetero | START_GAINED | |
| SBS | Chr5 | 29771040 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 3943166 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 16536916 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 16600201 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16600205 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 3624883 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 21829960 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7627816 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 3508437 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27180908 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15200646 | A-C | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 5837395 | 5837402 | 7 | |
| Deletion | Chr10 | 6326950 | 6326958 | 8 | |
| Deletion | Chr3 | 21787139 | 21787151 | 12 | |
| Deletion | Chr3 | 22874326 | 22874337 | 11 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 29711027 | 29711030 | 2 | |
| Insertion | Chr7 | 7057848 | 7057851 | 2 | |
| Insertion | Chr9 | 3154700 | 3154702 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 17635329 | 17877169 | |
| Inversion | Chr6 | 17635340 | 17877174 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 22287993 | Chr4 | 15060205 | OsKitaake10g182500 |