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| Mutant Information |
|---|
| Mutant Name | FN3806-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3806-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 41
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21396581 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 9280081 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 17466636 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 20620279 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26603452 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 9597580 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9990901 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 12749543 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14414706 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23247298 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 1264818 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4556922 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 16199791 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16370478 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 17267754 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13524727 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 16534420 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25919295 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 21160095 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 21837810 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 27217095 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28607076 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 1136746 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 6200845 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 13004688 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13395840 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18210859 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 9078822 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14678042 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22850908 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 1019248 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8384730 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9230022 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 11734395 | T-C | Homo | INTRON | |
| SBS | Chr10 | 4651858 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5206726 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 10853017 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25163331 | T-G | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 9611462 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9724142 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g093700 |
| SBS | Chr12 | 23791475 | C-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1594693 | 1594699 | 6 | |
| Deletion | Chr3 | 2156428 | 2156429 | 1 | OsKitaake03g030800 |
| Deletion | Chr4 | 6734356 | 6734366 | 10 | |
| Deletion | Chr1 | 9875117 | 9875119 | 2 | |
| Deletion | Chr9 | 14711490 | 14711492 | 2 | |
| Deletion | Chr2 | 16451904 | 16451906 | 2 | |
| Deletion | Chr5 | 19341624 | 19341644 | 20 | |
| Deletion | Chr4 | 20703043 | 20703045 | 2 | |
| Deletion | Chr2 | 26545844 | 26545850 | 6 | |
| Deletion | Chr6 | 28206052 | 28206054 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 28828318 | 28828321 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 11426705 | 12159127 | |
| Inversion | Chr12 | 18381263 | 19222965 | OsKitaake12g143400 |
| Inversion | Chr12 | 18381266 | 19225231 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 9036556 | Chr1 | 3637925 | OsKitaake03g124100 |
| Translocation | Chr7 | 11426770 | Chr2 | 34935411 | OsKitaake02g364400 |
| Translocation | Chr7 | 11878706 | Chr2 | 34891289 | |
| Translocation | Chr12 | 19222968 | Chr1 | 3637925 | OsKitaake12g143400 |