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Mutant Information

Mutant Name	FN3807-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3807-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1040939 G-A Hetero INTERGENIC
SBS Chr1 7696495 C-A Hetero INTERGENIC
SBS Chr1 11577854 G-A Hetero INTERGENIC
SBS Chr1 25904959 T-G Hetero INTERGENIC
SBS Chr1 26525906 G-A Hetero INTERGENIC
SBS Chr1 40590764 T-A Hetero INTRON
SBS Chr2 5753153 C-A Hetero INTERGENIC
SBS Chr2 7971652 T-C Hetero INTERGENIC
SBS Chr2 17911182 C-T Hetero INTERGENIC
SBS Chr2 24939800 C-T Hetero INTERGENIC
SBS Chr2 36424920 T-G Homo UTR_5_PRIME
SBS Chr3 1350372 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g019800
SBS Chr3 8634946 G-A Hetero INTERGENIC
SBS Chr3 8731794 C-A Hetero INTERGENIC
SBS Chr3 23642645 G-A Hetero UTR_3_PRIME
SBS Chr3 24825471 C-T Hetero INTERGENIC
SBS Chr3 26982621 C-T Hetero INTERGENIC
SBS Chr4 964059 G-A Hetero INTERGENIC
SBS Chr4 5211053 G-A Hetero INTERGENIC
SBS Chr4 6138479 A-G Hetero SYNONYMOUS_CODING
SBS Chr4 7207269 G-A Hetero INTERGENIC
SBS Chr4 9416320 A-C Hetero INTERGENIC
SBS Chr4 10175775 T-C Hetero INTERGENIC
SBS Chr4 13952314 G-A Hetero INTERGENIC
SBS Chr4 23455538 T-C Hetero SYNONYMOUS_CODING
SBS Chr4 28083495 A-G Hetero INTERGENIC
SBS Chr4 33528566 G-A Hetero UTR_3_PRIME
SBS Chr5 184512 C-T Hetero UTR_3_PRIME
SBS Chr6 4739353 A-T Hetero INTERGENIC
SBS Chr6 6117066 T-C Hetero INTRON
SBS Chr6 8140670 C-A Hetero INTERGENIC
SBS Chr6 16492023 T-A Hetero INTERGENIC
SBS Chr7 5080728 C-T Hetero INTERGENIC
SBS Chr7 8124242 A-T Hetero INTERGENIC
SBS Chr7 28597708 T-G Homo INTERGENIC
SBS Chr7 28870715 C-T Homo INTERGENIC
SBS Chr8 1523321 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 10963112 A-C Hetero INTERGENIC
SBS Chr8 22114597 G-A Hetero INTERGENIC
SBS Chr9 41841 C-T Homo INTERGENIC
SBS Chr9 7446044 C-G Hetero INTERGENIC
SBS Chr9 14578487 A-T Hetero INTRON
SBS Chr9 19599820 C-T Hetero INTERGENIC
SBS Chr10 9031837 G-A Hetero INTERGENIC
SBS Chr10 11092838 C-T Hetero INTERGENIC
SBS Chr10 17783198 T-C Hetero INTERGENIC
SBS Chr10 21539797 C-T Hetero INTERGENIC
SBS Chr11 526285 T-A Homo INTERGENIC
SBS Chr11 3537894 G-A Homo INTERGENIC
SBS Chr11 19059463 G-A Hetero INTERGENIC
SBS Chr11 24807073 T-A Homo INTERGENIC
SBS Chr12 2888466 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 887879 887887 8
Deletion Chr1 1970182 1970187 5 OsKitaake01g023608
Deletion Chr8 3263860 3263865 5
Deletion Chr8 5785704 5785707 3
Deletion Chr12 6066711 6066716 5
Deletion Chr9 7565782 7565784 2
Deletion Chr2 19653939 19653940 1 OsKitaake02g192100
Deletion Chr4 24461072 24461078 6
Deletion Chr11 28896913 28896918 5
Deletion Chr6 30913470 30913475 5 OsKitaake06g292800

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27075818 27075821 2
Insertion Chr1 41184133 41184138 4
Insertion Chr5 3485526 3485530 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 17023618 Chr8 6669757
Translocation Chr12 17029663 Chr8 6669749

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1040939	G-A	Hetero	INTERGENIC
SBS	Chr1	7696495	C-A	Hetero	INTERGENIC
SBS	Chr1	11577854	G-A	Hetero	INTERGENIC
SBS	Chr1	25904959	T-G	Hetero	INTERGENIC
SBS	Chr1	26525906	G-A	Hetero	INTERGENIC
SBS	Chr1	40590764	T-A	Hetero	INTRON
SBS	Chr2	5753153	C-A	Hetero	INTERGENIC
SBS	Chr2	7971652	T-C	Hetero	INTERGENIC
SBS	Chr2	17911182	C-T	Hetero	INTERGENIC
SBS	Chr2	24939800	C-T	Hetero	INTERGENIC
SBS	Chr2	36424920	T-G	Homo	UTR_5_PRIME
SBS	Chr3	1350372	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g019800
SBS	Chr3	8634946	G-A	Hetero	INTERGENIC
SBS	Chr3	8731794	C-A	Hetero	INTERGENIC
SBS	Chr3	23642645	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	24825471	C-T	Hetero	INTERGENIC
SBS	Chr3	26982621	C-T	Hetero	INTERGENIC
SBS	Chr4	964059	G-A	Hetero	INTERGENIC
SBS	Chr4	5211053	G-A	Hetero	INTERGENIC
SBS	Chr4	6138479	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	7207269	G-A	Hetero	INTERGENIC
SBS	Chr4	9416320	A-C	Hetero	INTERGENIC
SBS	Chr4	10175775	T-C	Hetero	INTERGENIC
SBS	Chr4	13952314	G-A	Hetero	INTERGENIC
SBS	Chr4	23455538	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	28083495	A-G	Hetero	INTERGENIC
SBS	Chr4	33528566	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	184512	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	4739353	A-T	Hetero	INTERGENIC
SBS	Chr6	6117066	T-C	Hetero	INTRON
SBS	Chr6	8140670	C-A	Hetero	INTERGENIC
SBS	Chr6	16492023	T-A	Hetero	INTERGENIC
SBS	Chr7	5080728	C-T	Hetero	INTERGENIC
SBS	Chr7	8124242	A-T	Hetero	INTERGENIC
SBS	Chr7	28597708	T-G	Homo	INTERGENIC
SBS	Chr7	28870715	C-T	Homo	INTERGENIC
SBS	Chr8	1523321	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	10963112	A-C	Hetero	INTERGENIC
SBS	Chr8	22114597	G-A	Hetero	INTERGENIC
SBS	Chr9	41841	C-T	Homo	INTERGENIC
SBS	Chr9	7446044	C-G	Hetero	INTERGENIC
SBS	Chr9	14578487	A-T	Hetero	INTRON
SBS	Chr9	19599820	C-T	Hetero	INTERGENIC
SBS	Chr10	9031837	G-A	Hetero	INTERGENIC
SBS	Chr10	11092838	C-T	Hetero	INTERGENIC
SBS	Chr10	17783198	T-C	Hetero	INTERGENIC
SBS	Chr10	21539797	C-T	Hetero	INTERGENIC
SBS	Chr11	526285	T-A	Homo	INTERGENIC
SBS	Chr11	3537894	G-A	Homo	INTERGENIC
SBS	Chr11	19059463	G-A	Hetero	INTERGENIC
SBS	Chr11	24807073	T-A	Homo	INTERGENIC
SBS	Chr12	2888466	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	887879	887887	8
Deletion	Chr1	1970182	1970187	5	OsKitaake01g023608
Deletion	Chr8	3263860	3263865	5
Deletion	Chr8	5785704	5785707	3
Deletion	Chr12	6066711	6066716	5
Deletion	Chr9	7565782	7565784	2
Deletion	Chr2	19653939	19653940	1	OsKitaake02g192100
Deletion	Chr4	24461072	24461078	6
Deletion	Chr11	28896913	28896918	5
Deletion	Chr6	30913470	30913475	5	OsKitaake06g292800

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	17023618	Chr8	6669757
Translocation	Chr12	17029663	Chr8	6669749

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes