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| Mutant Information |
|---|
| Mutant Name | FN3808-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3808-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9200805 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6078574 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 12842238 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 32702344 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6253502 | A-T | Homo | INTRON | |
| SBS | Chr3 | 15377826 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 27404878 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 37647988 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14531733 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14531734 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7302038 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7302039 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8327690 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 4526460 | T-A | Hetero | INTRON | |
| SBS | Chr7 | 19633926 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20385467 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27690114 | G-T | Hetero | INTRON | |
| SBS | Chr8 | 3271805 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 4843186 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 28097649 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 5480324 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 5499089 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g031600 |
| SBS | Chr10 | 8347462 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8904908 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 19844254 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 19892489 | A-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3204673 | 3204675 | 2 | |
| Deletion | Chr2 | 3861001 | 4003000 | 141999 | 16 |
| Deletion | Chr12 | 4902993 | 4902994 | 1 | |
| Deletion | Chr12 | 12397996 | 12397997 | 1 | |
| Deletion | Chr11 | 12725917 | 12725918 | 1 | |
| Deletion | Chr2 | 12872818 | 12872821 | 3 | |
| Deletion | Chr10 | 14695589 | 14695596 | 7 | |
| Deletion | Chr2 | 16117400 | 16117409 | 9 | |
| Deletion | Chr3 | 21803383 | 21803386 | 3 | |
| Deletion | Chr9 | 21973526 | 21973527 | 1 | OsKitaake09g195800 |
| Deletion | Chr3 | 22647645 | 22647651 | 6 | |
| Deletion | Chr6 | 25342124 | 25342127 | 3 | |
| Deletion | Chr3 | 37462001 | 37476000 | 13999 | 2 |
| Deletion | Chr1 | 42087461 | 42087468 | 7 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 14823558 | 14823560 | 1 |
Inversions: 5
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 10946855 | Chr2 | 24698 | |
| Translocation | Chr9 | 10954163 | Chr5 | 16112959 | |
| Translocation | Chr7 | 23026282 | Chr3 | 9952710 | 2 |
| Translocation | Chr7 | 23026322 | Chr3 | 9950690 | 2 |
| Translocation | Chr8 | 24698184 | Chr1 | 7358994 |