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| Mutant Information |
|---|
| Mutant Name | FN3809-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3809-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14494697 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 1977073 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 19575816 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18018629 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 22209985 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 29368003 | C-T | Homo | INTRON | |
| SBS | Chr3 | 33286508 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 37583624 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 2533745 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 2533746 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 2533747 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 5025589 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 5859980 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10033656 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11424921 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14763516 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 26942962 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 4041063 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 8734691 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 11288279 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14379239 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 18008580 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 21460189 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 26929638 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 6641827 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 13117990 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13346307 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6484146 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 11980659 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1226055 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9436519 | T-A | Homo | INTRON | |
| SBS | Chr8 | 16820793 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 3552978 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 6788413 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14113542 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g094700 |
| SBS | Chr10 | 12478603 | T-C | Hetero | INTRON | |
| SBS | Chr11 | 2039643 | A-T | Homo | INTRON | |
| SBS | Chr11 | 26001232 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19227460 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g143501 |
| SBS | Chr12 | 24785529 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g201000 |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 604001 | 623000 | 18999 | OsKitaake09g004400 |
| Deletion | Chr10 | 7193001 | 7560000 | 366999 | 16 |
| Deletion | Chr6 | 8004654 | 8004662 | 8 | |
| Deletion | Chr10 | 8630001 | 8649000 | 18999 | OsKitaake10g053100 |
| Deletion | Chr6 | 14382303 | 14382330 | 27 | |
| Deletion | Chr8 | 19786567 | 19786568 | 1 | |
| Deletion | Chr5 | 25773082 | 25773085 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 20651275 | 20651279 | 3 | |
| Insertion | Chr6 | 6503784 | 6503789 | 4 |