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Mutant Information

Mutant Name	FN3810-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3810-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6980984 C-A Hetero INTERGENIC
SBS Chr1 8190121 A-T Hetero INTERGENIC
SBS Chr1 23523082 G-A Hetero INTRON
SBS Chr1 24034738 G-T Hetero INTERGENIC
SBS Chr1 33664641 T-G Hetero UTR_3_PRIME
SBS Chr1 37801201 T-A Hetero INTERGENIC
SBS Chr1 37875578 C-T Hetero INTERGENIC
SBS Chr2 2415455 G-T Homo INTRON
SBS Chr2 9631461 C-T Homo INTRON
SBS Chr2 19493807 C-G Homo INTERGENIC
SBS Chr2 29826898 G-C Hetero INTERGENIC
SBS Chr2 31375120 T-A Homo INTERGENIC
SBS Chr4 8486046 C-T Hetero INTERGENIC
SBS Chr4 24331159 C-T Homo INTERGENIC
SBS Chr4 35664714 G-A Homo INTRON
SBS Chr5 15405567 G-A Hetero INTERGENIC
SBS Chr5 24977555 T-C Homo INTERGENIC
SBS Chr5 27953294 G-A Homo UTR_5_PRIME
SBS Chr6 14614092 T-C Homo INTERGENIC
SBS Chr6 28707330 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g264600
SBS Chr7 9675350 A-T Hetero INTERGENIC
SBS Chr8 168652 C-T Hetero INTERGENIC
SBS Chr8 441754 T-A Hetero INTERGENIC
SBS Chr8 441843 G-C Hetero INTERGENIC
SBS Chr8 6919226 A-T Hetero INTERGENIC
SBS Chr8 7956633 C-A Hetero INTERGENIC
SBS Chr8 10708599 G-A Hetero INTERGENIC
SBS Chr8 19766526 G-A Hetero INTRON
SBS Chr9 952708 T-G Hetero INTERGENIC
SBS Chr9 10863629 T-G Hetero INTRON
SBS Chr9 13180927 C-T Hetero INTERGENIC
SBS Chr9 18244038 A-C Hetero INTERGENIC
SBS Chr9 20726635 A-G Hetero INTRON
SBS Chr10 1830658 G-A Hetero INTRON
SBS Chr10 9045702 C-T Hetero INTERGENIC
SBS Chr10 19723317 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 22413885 G-A Homo INTERGENIC
SBS Chr11 3858353 T-A Hetero INTERGENIC
SBS Chr11 16004578 C-G Hetero INTERGENIC
SBS Chr11 21200159 G-A Hetero INTERGENIC
SBS Chr11 21720628 C-T Homo INTERGENIC
SBS Chr12 9418118 C-T Hetero INTERGENIC
SBS Chr12 21242589 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 845383 845384 1
Deletion Chr4 2425609 2425617 8 OsKitaake04g015000
Deletion Chr7 5379261 5379265 4 OsKitaake07g065350
Deletion Chr8 5542636 5542637 1
Deletion Chr5 8107387 8107394 7
Deletion Chr1 14230011 14230013 2
Deletion Chr7 15060001 15108000 47999 4
Deletion Chr12 16668001 16679000 10999 OsKitaake12g125100
Deletion Chr12 16685001 16731000 45999 2
Deletion Chr6 19589022 19589043 21
Deletion Chr6 20225876 20225877 1
Deletion Chr1 27255909 27255912 3 OsKitaake01g265100
Deletion Chr4 34887379 34887380 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8184555 8184559 3
Insertion Chr4 36157070 36157072 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 15715382 15893184 OsKitaake05g120800
Inversion Chr5 15715383 15893320 OsKitaake05g120800
Inversion Chr6 24947232 25308871 2
Inversion Chr6 24947244 25308879 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6980984	C-A	Hetero	INTERGENIC
SBS	Chr1	8190121	A-T	Hetero	INTERGENIC
SBS	Chr1	23523082	G-A	Hetero	INTRON
SBS	Chr1	24034738	G-T	Hetero	INTERGENIC
SBS	Chr1	33664641	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	37801201	T-A	Hetero	INTERGENIC
SBS	Chr1	37875578	C-T	Hetero	INTERGENIC
SBS	Chr2	2415455	G-T	Homo	INTRON
SBS	Chr2	9631461	C-T	Homo	INTRON
SBS	Chr2	19493807	C-G	Homo	INTERGENIC
SBS	Chr2	29826898	G-C	Hetero	INTERGENIC
SBS	Chr2	31375120	T-A	Homo	INTERGENIC
SBS	Chr4	8486046	C-T	Hetero	INTERGENIC
SBS	Chr4	24331159	C-T	Homo	INTERGENIC
SBS	Chr4	35664714	G-A	Homo	INTRON
SBS	Chr5	15405567	G-A	Hetero	INTERGENIC
SBS	Chr5	24977555	T-C	Homo	INTERGENIC
SBS	Chr5	27953294	G-A	Homo	UTR_5_PRIME
SBS	Chr6	14614092	T-C	Homo	INTERGENIC
SBS	Chr6	28707330	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g264600
SBS	Chr7	9675350	A-T	Hetero	INTERGENIC
SBS	Chr8	168652	C-T	Hetero	INTERGENIC
SBS	Chr8	441754	T-A	Hetero	INTERGENIC
SBS	Chr8	441843	G-C	Hetero	INTERGENIC
SBS	Chr8	6919226	A-T	Hetero	INTERGENIC
SBS	Chr8	7956633	C-A	Hetero	INTERGENIC
SBS	Chr8	10708599	G-A	Hetero	INTERGENIC
SBS	Chr8	19766526	G-A	Hetero	INTRON
SBS	Chr9	952708	T-G	Hetero	INTERGENIC
SBS	Chr9	10863629	T-G	Hetero	INTRON
SBS	Chr9	13180927	C-T	Hetero	INTERGENIC
SBS	Chr9	18244038	A-C	Hetero	INTERGENIC
SBS	Chr9	20726635	A-G	Hetero	INTRON
SBS	Chr10	1830658	G-A	Hetero	INTRON
SBS	Chr10	9045702	C-T	Hetero	INTERGENIC
SBS	Chr10	19723317	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	22413885	G-A	Homo	INTERGENIC
SBS	Chr11	3858353	T-A	Hetero	INTERGENIC
SBS	Chr11	16004578	C-G	Hetero	INTERGENIC
SBS	Chr11	21200159	G-A	Hetero	INTERGENIC
SBS	Chr11	21720628	C-T	Homo	INTERGENIC
SBS	Chr12	9418118	C-T	Hetero	INTERGENIC
SBS	Chr12	21242589	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	845383	845384	1
Deletion	Chr4	2425609	2425617	8	OsKitaake04g015000
Deletion	Chr7	5379261	5379265	4	OsKitaake07g065350
Deletion	Chr8	5542636	5542637	1
Deletion	Chr5	8107387	8107394	7
Deletion	Chr1	14230011	14230013	2
Deletion	Chr7	15060001	15108000	47999	4
Deletion	Chr12	16668001	16679000	10999	OsKitaake12g125100
Deletion	Chr12	16685001	16731000	45999	2
Deletion	Chr6	19589022	19589043	21
Deletion	Chr6	20225876	20225877	1
Deletion	Chr1	27255909	27255912	3	OsKitaake01g265100
Deletion	Chr4	34887379	34887380	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	15715382	15893184	OsKitaake05g120800
Inversion	Chr5	15715383	15893320	OsKitaake05g120800
Inversion	Chr6	24947232	25308871	2
Inversion	Chr6	24947244	25308879	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes