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Mutant Information

Mutant Name	FN3811-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3811-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1882603 T-C Hetero INTERGENIC
SBS Chr1 5849349 G-C Hetero INTERGENIC
SBS Chr1 8305269 T-A Hetero INTRON
SBS Chr1 27947935 C-T Hetero INTERGENIC
SBS Chr1 34149396 C-T Hetero INTERGENIC
SBS Chr2 15940786 G-C Hetero INTERGENIC
SBS Chr2 35988106 C-A Hetero INTRON
SBS Chr3 13554045 G-A Hetero INTERGENIC
SBS Chr3 18955472 C-T Hetero INTERGENIC
SBS Chr3 24954379 C-A Hetero INTERGENIC
SBS Chr3 30815609 A-T Hetero INTRON
SBS Chr4 1482988 A-T Homo INTERGENIC
SBS Chr4 6349187 T-A Homo INTERGENIC
SBS Chr4 16567461 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 24467494 G-T Hetero INTERGENIC
SBS Chr4 29135436 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 31999579 T-A Hetero INTERGENIC
SBS Chr5 4893059 G-A Homo SYNONYMOUS_CODING
SBS Chr5 10684513 G-T Hetero INTERGENIC
SBS Chr5 13208512 A-T Hetero INTERGENIC
SBS Chr5 16898130 G-C Hetero INTERGENIC
SBS Chr6 9390962 T-C Homo INTERGENIC
SBS Chr6 30675302 G-A Hetero INTERGENIC
SBS Chr7 18397015 T-G Hetero INTERGENIC
SBS Chr7 22793119 C-A Hetero INTRON
SBS Chr7 22793120 C-A Hetero INTRON
SBS Chr8 4071133 C-T Hetero STOP_GAINED OsKitaake08g046300
SBS Chr8 12418173 G-A Hetero INTERGENIC
SBS Chr8 22878741 A-T Hetero INTERGENIC
SBS Chr9 19823172 T-A Homo INTRON
SBS Chr10 17847073 G-T Hetero INTERGENIC
SBS Chr10 21702136 C-T Hetero INTERGENIC
SBS Chr11 6765929 T-A Hetero INTERGENIC
SBS Chr11 18814527 G-A Hetero INTERGENIC
SBS Chr11 20979808 C-T Hetero INTERGENIC
SBS Chr11 27173124 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g221700
SBS Chr11 28965635 G-A Hetero INTERGENIC
SBS Chr12 7345691 G-A Hetero UTR_5_PRIME
SBS Chr12 7345692 C-A Hetero UTR_5_PRIME
SBS Chr12 11196362 G-A Hetero INTERGENIC
SBS Chr12 14748256 C-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 806090 806095 5
Deletion Chr11 884001 948000 63999 5
Deletion Chr7 1219591 1219600 9 OsKitaake07g017100
Deletion Chr1 1685607 1685609 2
Deletion Chr1 6629641 6629647 6
Deletion Chr12 9363001 9603000 239999 15
Deletion Chr12 9607001 9744000 136999 10
Deletion Chr8 9608763 9608765 2
Deletion Chr3 9892414 9892418 4
Deletion Chr3 10282850 10282859 9
Deletion Chr3 12096794 12096796 2
Deletion Chr8 14493964 14493968 4
Deletion Chr12 19401800 19401892 92
Deletion Chr7 20102554 20102556 2
Deletion Chr1 20371402 20371427 25
Deletion Chr8 27917513 27917519 6
Deletion Chr2 33021141 33021152 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 27533966 27533969 2
Insertion Chr10 12077846 12077848 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 9382625 9979415 OsKitaake01g126300
Inversion Chr1 9382642 9979538 OsKitaake01g126300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 16201570 Chr4 29765996 OsKitaake04g228500
Translocation Chr7 16201812 Chr4 29765996 OsKitaake04g228500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1882603	T-C	Hetero	INTERGENIC
SBS	Chr1	5849349	G-C	Hetero	INTERGENIC
SBS	Chr1	8305269	T-A	Hetero	INTRON
SBS	Chr1	27947935	C-T	Hetero	INTERGENIC
SBS	Chr1	34149396	C-T	Hetero	INTERGENIC
SBS	Chr2	15940786	G-C	Hetero	INTERGENIC
SBS	Chr2	35988106	C-A	Hetero	INTRON
SBS	Chr3	13554045	G-A	Hetero	INTERGENIC
SBS	Chr3	18955472	C-T	Hetero	INTERGENIC
SBS	Chr3	24954379	C-A	Hetero	INTERGENIC
SBS	Chr3	30815609	A-T	Hetero	INTRON
SBS	Chr4	1482988	A-T	Homo	INTERGENIC
SBS	Chr4	6349187	T-A	Homo	INTERGENIC
SBS	Chr4	16567461	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	24467494	G-T	Hetero	INTERGENIC
SBS	Chr4	29135436	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	31999579	T-A	Hetero	INTERGENIC
SBS	Chr5	4893059	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	10684513	G-T	Hetero	INTERGENIC
SBS	Chr5	13208512	A-T	Hetero	INTERGENIC
SBS	Chr5	16898130	G-C	Hetero	INTERGENIC
SBS	Chr6	9390962	T-C	Homo	INTERGENIC
SBS	Chr6	30675302	G-A	Hetero	INTERGENIC
SBS	Chr7	18397015	T-G	Hetero	INTERGENIC
SBS	Chr7	22793119	C-A	Hetero	INTRON
SBS	Chr7	22793120	C-A	Hetero	INTRON
SBS	Chr8	4071133	C-T	Hetero	STOP_GAINED	OsKitaake08g046300
SBS	Chr8	12418173	G-A	Hetero	INTERGENIC
SBS	Chr8	22878741	A-T	Hetero	INTERGENIC
SBS	Chr9	19823172	T-A	Homo	INTRON
SBS	Chr10	17847073	G-T	Hetero	INTERGENIC
SBS	Chr10	21702136	C-T	Hetero	INTERGENIC
SBS	Chr11	6765929	T-A	Hetero	INTERGENIC
SBS	Chr11	18814527	G-A	Hetero	INTERGENIC
SBS	Chr11	20979808	C-T	Hetero	INTERGENIC
SBS	Chr11	27173124	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g221700
SBS	Chr11	28965635	G-A	Hetero	INTERGENIC
SBS	Chr12	7345691	G-A	Hetero	UTR_5_PRIME
SBS	Chr12	7345692	C-A	Hetero	UTR_5_PRIME
SBS	Chr12	11196362	G-A	Hetero	INTERGENIC
SBS	Chr12	14748256	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	806090	806095	5
Deletion	Chr11	884001	948000	63999	5
Deletion	Chr7	1219591	1219600	9	OsKitaake07g017100
Deletion	Chr1	1685607	1685609	2
Deletion	Chr1	6629641	6629647	6
Deletion	Chr12	9363001	9603000	239999	15
Deletion	Chr12	9607001	9744000	136999	10
Deletion	Chr8	9608763	9608765	2
Deletion	Chr3	9892414	9892418	4
Deletion	Chr3	10282850	10282859	9
Deletion	Chr3	12096794	12096796	2
Deletion	Chr8	14493964	14493968	4
Deletion	Chr12	19401800	19401892	92
Deletion	Chr7	20102554	20102556	2
Deletion	Chr1	20371402	20371427	25
Deletion	Chr8	27917513	27917519	6
Deletion	Chr2	33021141	33021152	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9382625	9979415	OsKitaake01g126300
Inversion	Chr1	9382642	9979538	OsKitaake01g126300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes