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| Mutant Information |
|---|
| Mutant Name | FN3814-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3814-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13943127 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 23052954 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 23797648 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 43524012 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 29001370 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11900951 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 16934516 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27463395 | T-G | Hetero | INTRON | |
| SBS | Chr3 | 30509239 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33732592 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25167372 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21205588 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 336295 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6940422 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 23593097 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 19155394 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6510168 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 19460759 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 16470860 | A-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 5247001 | 5305000 | 57999 | 7 |
| Deletion | Chr4 | 10370826 | 10370827 | 1 | OsKitaake04g055000 |
| Deletion | Chr4 | 13756065 | 13756066 | 1 | |
| Deletion | Chr4 | 14410780 | 14410781 | 1 | |
| Deletion | Chr4 | 17392214 | 17392217 | 3 | |
| Deletion | Chr8 | 17603495 | 17603496 | 1 | |
| Deletion | Chr12 | 19219001 | 19231000 | 11999 | 2 |
| Deletion | Chr6 | 19322221 | 19322226 | 5 | |
| Deletion | Chr10 | 22608468 | 22608471 | 3 | |
| Deletion | Chr5 | 29757737 | 29757745 | 8 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 34236483 | 34236486 | 2 | |
| Insertion | Chr6 | 13707497 | 13707501 | 3 | |
| Insertion | Chr2 | 35328984 | 35328987 | 2 | |
| Insertion | Chr5 | 9695636 | 9695638 | 1 | OsKitaake05g088800  |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 18602950 | 19230983 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 12375640 | Chr2 | 21323711 | 2 |
| Translocation | Chr11 | 12376608 | Chr2 | 21323715 | OsKitaake02g205600 |
| Translocation | Chr11 | 25162479 | Chr5 | 21752114 |