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Mutant Information

Mutant Name	FN3815-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3815-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 105

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2303826 T-A Hetero INTRON
SBS Chr1 2476787 T-A Hetero INTERGENIC
SBS Chr1 3171607 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g041400
SBS Chr1 3592815 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 3592833 A-T Hetero SYNONYMOUS_CODING
SBS Chr1 6907839 G-T Homo STOP_GAINED OsKitaake01g086900
SBS Chr1 7158054 G-T Hetero INTERGENIC
SBS Chr1 10152522 G-A Hetero INTERGENIC
SBS Chr1 15328243 C-A Hetero INTERGENIC
SBS Chr1 17397741 G-A Hetero INTERGENIC
SBS Chr1 20637799 T-A Hetero INTERGENIC
SBS Chr1 21719176 G-A Hetero INTERGENIC
SBS Chr1 25068605 A-T Hetero INTERGENIC
SBS Chr1 25506951 C-A Hetero INTERGENIC
SBS Chr1 27637019 A-G Homo INTERGENIC
SBS Chr1 27637024 C-T Homo INTERGENIC
SBS Chr1 34527516 G-T Hetero INTERGENIC
SBS Chr1 36752021 C-A Hetero INTERGENIC
SBS Chr1 38976487 C-A Hetero INTERGENIC
SBS Chr1 40231141 G-T Hetero INTERGENIC
SBS Chr2 16264396 A-C Hetero INTERGENIC
SBS Chr2 25827748 G-A Hetero INTERGENIC
SBS Chr2 26225983 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 26520011 A-T Hetero INTERGENIC
SBS Chr2 28639380 C-T Hetero INTERGENIC
SBS Chr2 29574456 C-T Hetero INTERGENIC
SBS Chr2 30547568 A-T Hetero INTERGENIC
SBS Chr2 30891136 C-A Hetero INTERGENIC
SBS Chr3 8539861 T-A Hetero INTERGENIC
SBS Chr3 8749107 A-T Hetero INTERGENIC
SBS Chr3 10024671 A-G Hetero INTERGENIC
SBS Chr3 15579405 G-T Hetero INTERGENIC
SBS Chr3 16458590 A-T Hetero INTERGENIC
SBS Chr3 17664070 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g217000
SBS Chr3 20259790 A-T Hetero INTERGENIC
SBS Chr3 20259791 G-T Hetero INTERGENIC
SBS Chr3 21452109 C-A Hetero INTERGENIC
SBS Chr3 21608714 G-T Hetero INTERGENIC
SBS Chr3 27880072 T-A Hetero INTERGENIC
SBS Chr4 992997 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g007800
SBS Chr4 2326835 A-G Hetero INTERGENIC
SBS Chr4 2372167 A-G Hetero INTERGENIC
SBS Chr4 6433953 G-C Hetero INTERGENIC
SBS Chr4 12059423 G-C Hetero INTERGENIC
SBS Chr4 12106962 A-G Hetero INTERGENIC
SBS Chr4 18673490 G-T Hetero INTRON
SBS Chr4 33246743 G-T Hetero INTERGENIC
SBS Chr5 1839293 C-A Hetero INTERGENIC
SBS Chr5 9580434 C-A Hetero INTERGENIC
SBS Chr5 9697984 C-A Hetero INTRON
SBS Chr5 15042186 G-A Hetero INTERGENIC
SBS Chr5 22654095 T-A Hetero INTERGENIC
SBS Chr5 28550896 T-A Hetero INTERGENIC
SBS Chr5 29883294 C-A Hetero INTRON
SBS Chr6 263329 T-A Hetero UTR_3_PRIME
SBS Chr6 858925 C-A Hetero INTERGENIC
SBS Chr6 7088557 G-T Hetero INTERGENIC
SBS Chr6 7095039 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g091600
SBS Chr6 10312528 G-T Hetero INTERGENIC
SBS Chr6 18643683 C-T Hetero INTERGENIC
SBS Chr6 22654530 A-G Hetero INTERGENIC
SBS Chr6 23660607 C-T Hetero INTERGENIC
SBS Chr7 13064076 C-T Hetero INTERGENIC
SBS Chr7 13064080 C-G Hetero INTERGENIC
SBS Chr7 13081338 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g115600
SBS Chr7 13665123 G-A Hetero INTERGENIC
SBS Chr7 25523577 C-A Hetero INTERGENIC
SBS Chr7 26063803 G-A Hetero INTERGENIC
SBS Chr7 26867363 G-A Homo INTERGENIC
SBS Chr8 1237311 C-G Hetero INTERGENIC
SBS Chr8 13157679 T-A Hetero UTR_3_PRIME
SBS Chr8 18449761 G-C Hetero INTRON
SBS Chr8 19222799 T-A Hetero INTERGENIC
SBS Chr8 21532932 C-A Hetero INTERGENIC
SBS Chr8 25336211 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g198400
SBS Chr8 26145033 A-T Hetero INTERGENIC
SBS Chr8 27690138 T-A Hetero INTERGENIC
SBS Chr9 10436794 G-A Hetero INTERGENIC
SBS Chr9 11375260 G-T Hetero INTERGENIC
SBS Chr9 17190313 A-T Hetero INTERGENIC
SBS Chr9 17463691 G-T Hetero INTERGENIC
SBS Chr9 21486385 G-T Hetero INTRON
SBS Chr10 836528 T-A Hetero INTERGENIC
SBS Chr10 1806215 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g013200
SBS Chr10 3663832 G-C Hetero INTERGENIC
SBS Chr10 14515042 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g090900
SBS Chr10 15869234 G-A Hetero INTERGENIC
SBS Chr10 16270687 A-C Hetero INTERGENIC
SBS Chr10 16270688 G-A Hetero INTERGENIC
SBS Chr10 21110289 G-T Hetero INTERGENIC
SBS Chr11 3347787 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g046400
SBS Chr11 5928476 G-T Hetero INTRON
SBS Chr11 9994559 G-A Homo INTERGENIC
SBS Chr11 11932075 G-T Hetero INTERGENIC
SBS Chr11 20360429 G-T Hetero INTRON
SBS Chr11 28231602 T-C Hetero INTERGENIC
SBS Chr12 662754 T-A Hetero INTRON
SBS Chr12 1576418 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g024100
SBS Chr12 2549555 G-T Hetero INTERGENIC
SBS Chr12 5963755 A-T Hetero INTERGENIC
SBS Chr12 6183247 G-T Hetero INTERGENIC
SBS Chr12 13770623 G-T Hetero INTERGENIC
SBS Chr12 15991808 A-T Hetero INTERGENIC
SBS Chr12 16980705 A-G Hetero INTERGENIC
SBS Chr12 17173363 G-T Hetero SYNONYMOUS_CODING

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2889127 2889128 1
Deletion Chr8 4536471 4536473 2
Deletion Chr3 6811001 6823000 11999 2
Deletion Chr4 12058086 12058090 4
Deletion Chr3 18205027 18205029 2
Deletion Chr5 22409140 22409141 1
Deletion Chr1 22721838 22721839 1
Deletion Chr1 32958494 32958495 1
Deletion Chr2 35332312 35332322 10
Deletion Chr3 35584834 35584838 4
Deletion Chr1 41850001 41868000 17999 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 19601915 19601918 2 OsKitaake03g228900
Insertion Chr9 16315087 16315090 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 5684151 5717605 OsKitaake03g080600
Inversion Chr3 5684202 5717631 OsKitaake03g080600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2303826	T-A	Hetero	INTRON
SBS	Chr1	2476787	T-A	Hetero	INTERGENIC
SBS	Chr1	3171607	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g041400
SBS	Chr1	3592815	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	3592833	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	6907839	G-T	Homo	STOP_GAINED	OsKitaake01g086900
SBS	Chr1	7158054	G-T	Hetero	INTERGENIC
SBS	Chr1	10152522	G-A	Hetero	INTERGENIC
SBS	Chr1	15328243	C-A	Hetero	INTERGENIC
SBS	Chr1	17397741	G-A	Hetero	INTERGENIC
SBS	Chr1	20637799	T-A	Hetero	INTERGENIC
SBS	Chr1	21719176	G-A	Hetero	INTERGENIC
SBS	Chr1	25068605	A-T	Hetero	INTERGENIC
SBS	Chr1	25506951	C-A	Hetero	INTERGENIC
SBS	Chr1	27637019	A-G	Homo	INTERGENIC
SBS	Chr1	27637024	C-T	Homo	INTERGENIC
SBS	Chr1	34527516	G-T	Hetero	INTERGENIC
SBS	Chr1	36752021	C-A	Hetero	INTERGENIC
SBS	Chr1	38976487	C-A	Hetero	INTERGENIC
SBS	Chr1	40231141	G-T	Hetero	INTERGENIC
SBS	Chr2	16264396	A-C	Hetero	INTERGENIC
SBS	Chr2	25827748	G-A	Hetero	INTERGENIC
SBS	Chr2	26225983	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	26520011	A-T	Hetero	INTERGENIC
SBS	Chr2	28639380	C-T	Hetero	INTERGENIC
SBS	Chr2	29574456	C-T	Hetero	INTERGENIC
SBS	Chr2	30547568	A-T	Hetero	INTERGENIC
SBS	Chr2	30891136	C-A	Hetero	INTERGENIC
SBS	Chr3	8539861	T-A	Hetero	INTERGENIC
SBS	Chr3	8749107	A-T	Hetero	INTERGENIC
SBS	Chr3	10024671	A-G	Hetero	INTERGENIC
SBS	Chr3	15579405	G-T	Hetero	INTERGENIC
SBS	Chr3	16458590	A-T	Hetero	INTERGENIC
SBS	Chr3	17664070	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g217000
SBS	Chr3	20259790	A-T	Hetero	INTERGENIC
SBS	Chr3	20259791	G-T	Hetero	INTERGENIC
SBS	Chr3	21452109	C-A	Hetero	INTERGENIC
SBS	Chr3	21608714	G-T	Hetero	INTERGENIC
SBS	Chr3	27880072	T-A	Hetero	INTERGENIC
SBS	Chr4	992997	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g007800
SBS	Chr4	2326835	A-G	Hetero	INTERGENIC
SBS	Chr4	2372167	A-G	Hetero	INTERGENIC
SBS	Chr4	6433953	G-C	Hetero	INTERGENIC
SBS	Chr4	12059423	G-C	Hetero	INTERGENIC
SBS	Chr4	12106962	A-G	Hetero	INTERGENIC
SBS	Chr4	18673490	G-T	Hetero	INTRON
SBS	Chr4	33246743	G-T	Hetero	INTERGENIC
SBS	Chr5	1839293	C-A	Hetero	INTERGENIC
SBS	Chr5	9580434	C-A	Hetero	INTERGENIC
SBS	Chr5	9697984	C-A	Hetero	INTRON
SBS	Chr5	15042186	G-A	Hetero	INTERGENIC
SBS	Chr5	22654095	T-A	Hetero	INTERGENIC
SBS	Chr5	28550896	T-A	Hetero	INTERGENIC
SBS	Chr5	29883294	C-A	Hetero	INTRON
SBS	Chr6	263329	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	858925	C-A	Hetero	INTERGENIC
SBS	Chr6	7088557	G-T	Hetero	INTERGENIC
SBS	Chr6	7095039	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g091600
SBS	Chr6	10312528	G-T	Hetero	INTERGENIC
SBS	Chr6	18643683	C-T	Hetero	INTERGENIC
SBS	Chr6	22654530	A-G	Hetero	INTERGENIC
SBS	Chr6	23660607	C-T	Hetero	INTERGENIC
SBS	Chr7	13064076	C-T	Hetero	INTERGENIC
SBS	Chr7	13064080	C-G	Hetero	INTERGENIC
SBS	Chr7	13081338	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g115600
SBS	Chr7	13665123	G-A	Hetero	INTERGENIC
SBS	Chr7	25523577	C-A	Hetero	INTERGENIC
SBS	Chr7	26063803	G-A	Hetero	INTERGENIC
SBS	Chr7	26867363	G-A	Homo	INTERGENIC
SBS	Chr8	1237311	C-G	Hetero	INTERGENIC
SBS	Chr8	13157679	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	18449761	G-C	Hetero	INTRON
SBS	Chr8	19222799	T-A	Hetero	INTERGENIC
SBS	Chr8	21532932	C-A	Hetero	INTERGENIC
SBS	Chr8	25336211	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g198400
SBS	Chr8	26145033	A-T	Hetero	INTERGENIC
SBS	Chr8	27690138	T-A	Hetero	INTERGENIC
SBS	Chr9	10436794	G-A	Hetero	INTERGENIC
SBS	Chr9	11375260	G-T	Hetero	INTERGENIC
SBS	Chr9	17190313	A-T	Hetero	INTERGENIC
SBS	Chr9	17463691	G-T	Hetero	INTERGENIC
SBS	Chr9	21486385	G-T	Hetero	INTRON
SBS	Chr10	836528	T-A	Hetero	INTERGENIC
SBS	Chr10	1806215	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g013200
SBS	Chr10	3663832	G-C	Hetero	INTERGENIC
SBS	Chr10	14515042	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g090900
SBS	Chr10	15869234	G-A	Hetero	INTERGENIC
SBS	Chr10	16270687	A-C	Hetero	INTERGENIC
SBS	Chr10	16270688	G-A	Hetero	INTERGENIC
SBS	Chr10	21110289	G-T	Hetero	INTERGENIC
SBS	Chr11	3347787	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g046400
SBS	Chr11	5928476	G-T	Hetero	INTRON
SBS	Chr11	9994559	G-A	Homo	INTERGENIC
SBS	Chr11	11932075	G-T	Hetero	INTERGENIC
SBS	Chr11	20360429	G-T	Hetero	INTRON
SBS	Chr11	28231602	T-C	Hetero	INTERGENIC
SBS	Chr12	662754	T-A	Hetero	INTRON
SBS	Chr12	1576418	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g024100
SBS	Chr12	2549555	G-T	Hetero	INTERGENIC
SBS	Chr12	5963755	A-T	Hetero	INTERGENIC
SBS	Chr12	6183247	G-T	Hetero	INTERGENIC
SBS	Chr12	13770623	G-T	Hetero	INTERGENIC
SBS	Chr12	15991808	A-T	Hetero	INTERGENIC
SBS	Chr12	16980705	A-G	Hetero	INTERGENIC
SBS	Chr12	17173363	G-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2889127	2889128	1
Deletion	Chr8	4536471	4536473	2
Deletion	Chr3	6811001	6823000	11999	2
Deletion	Chr4	12058086	12058090	4
Deletion	Chr3	18205027	18205029	2
Deletion	Chr5	22409140	22409141	1
Deletion	Chr1	22721838	22721839	1
Deletion	Chr1	32958494	32958495	1
Deletion	Chr2	35332312	35332322	10
Deletion	Chr3	35584834	35584838	4
Deletion	Chr1	41850001	41868000	17999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5684151	5717605	OsKitaake03g080600
Inversion	Chr3	5684202	5717631	OsKitaake03g080600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes