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Mutant Information

Mutant Name	FN3817-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3817-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11874897 G-A Hetero UTR_5_PRIME
SBS Chr1 11874898 G-A Hetero UTR_5_PRIME
SBS Chr1 11874900 G-A Hetero UTR_5_PRIME
SBS Chr1 13766280 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 14025481 A-T Hetero INTERGENIC
SBS Chr2 27336714 G-A Hetero INTERGENIC
SBS Chr2 27514364 G-A Hetero INTERGENIC
SBS Chr3 4120713 C-T Hetero INTRON
SBS Chr3 35648457 G-T Hetero INTRON
SBS Chr4 214393 T-A Hetero INTERGENIC
SBS Chr4 11220732 G-T Homo INTERGENIC
SBS Chr4 20009321 G-A Homo UTR_3_PRIME
SBS Chr4 28790197 T-C Hetero UTR_3_PRIME
SBS Chr5 4705296 C-T Hetero INTERGENIC
SBS Chr5 9195787 A-T Hetero INTERGENIC
SBS Chr5 9195790 A-G Hetero INTERGENIC
SBS Chr5 12254526 A-T Hetero INTERGENIC
SBS Chr5 22257343 G-A Hetero INTERGENIC
SBS Chr5 22470547 T-A Hetero INTERGENIC
SBS Chr5 30263342 A-G Hetero INTERGENIC
SBS Chr6 8144690 A-T Hetero INTERGENIC
SBS Chr6 21531643 C-A Hetero INTERGENIC
SBS Chr6 22261429 C-T Hetero INTRON
SBS Chr6 22824829 C-G Homo INTERGENIC
SBS Chr7 14802293 G-T Hetero INTERGENIC
SBS Chr7 16235377 G-C Homo INTERGENIC
SBS Chr8 786195 T-C Homo INTERGENIC
SBS Chr8 15507145 C-T Homo INTERGENIC
SBS Chr8 24983551 C-G Hetero INTERGENIC
SBS Chr8 25005465 C-G Hetero INTERGENIC
SBS Chr9 9999937 C-A Homo INTERGENIC
SBS Chr9 18810066 C-A Homo INTRON
SBS Chr10 4809846 C-G Hetero INTERGENIC
SBS Chr11 2735843 T-G Hetero INTERGENIC
SBS Chr11 10740863 G-T Hetero INTERGENIC
SBS Chr11 13626402 A-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 9534064 9534067 3
Deletion Chr10 10628001 10710000 81999 3
Deletion Chr6 11035001 11068000 32999 2
Deletion Chr3 11362945 11362951 6
Deletion Chr11 18528865 18528867 2
Deletion Chr6 27934384 27934390 6
Deletion Chr1 29095409 29095415 6
Deletion Chr6 30624291 30624295 4
Deletion Chr2 31074101 31074102 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 14327640 14327643 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 5207556 5409227 2
Inversion Chr11 17790715 18740084 OsKitaake11g145500

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 17291541 Chr4 29011751 2
Translocation Chr11 17292290 Chr2 16928590 OsKitaake11g134800
Translocation Chr11 17790700 Chr4 29013179 OsKitaake04g218800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11874897	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	11874898	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	11874900	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	13766280	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	14025481	A-T	Hetero	INTERGENIC
SBS	Chr2	27336714	G-A	Hetero	INTERGENIC
SBS	Chr2	27514364	G-A	Hetero	INTERGENIC
SBS	Chr3	4120713	C-T	Hetero	INTRON
SBS	Chr3	35648457	G-T	Hetero	INTRON
SBS	Chr4	214393	T-A	Hetero	INTERGENIC
SBS	Chr4	11220732	G-T	Homo	INTERGENIC
SBS	Chr4	20009321	G-A	Homo	UTR_3_PRIME
SBS	Chr4	28790197	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	4705296	C-T	Hetero	INTERGENIC
SBS	Chr5	9195787	A-T	Hetero	INTERGENIC
SBS	Chr5	9195790	A-G	Hetero	INTERGENIC
SBS	Chr5	12254526	A-T	Hetero	INTERGENIC
SBS	Chr5	22257343	G-A	Hetero	INTERGENIC
SBS	Chr5	22470547	T-A	Hetero	INTERGENIC
SBS	Chr5	30263342	A-G	Hetero	INTERGENIC
SBS	Chr6	8144690	A-T	Hetero	INTERGENIC
SBS	Chr6	21531643	C-A	Hetero	INTERGENIC
SBS	Chr6	22261429	C-T	Hetero	INTRON
SBS	Chr6	22824829	C-G	Homo	INTERGENIC
SBS	Chr7	14802293	G-T	Hetero	INTERGENIC
SBS	Chr7	16235377	G-C	Homo	INTERGENIC
SBS	Chr8	786195	T-C	Homo	INTERGENIC
SBS	Chr8	15507145	C-T	Homo	INTERGENIC
SBS	Chr8	24983551	C-G	Hetero	INTERGENIC
SBS	Chr8	25005465	C-G	Hetero	INTERGENIC
SBS	Chr9	9999937	C-A	Homo	INTERGENIC
SBS	Chr9	18810066	C-A	Homo	INTRON
SBS	Chr10	4809846	C-G	Hetero	INTERGENIC
SBS	Chr11	2735843	T-G	Hetero	INTERGENIC
SBS	Chr11	10740863	G-T	Hetero	INTERGENIC
SBS	Chr11	13626402	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	9534064	9534067	3
Deletion	Chr10	10628001	10710000	81999	3
Deletion	Chr6	11035001	11068000	32999	2
Deletion	Chr3	11362945	11362951	6
Deletion	Chr11	18528865	18528867	2
Deletion	Chr6	27934384	27934390	6
Deletion	Chr1	29095409	29095415	6
Deletion	Chr6	30624291	30624295	4
Deletion	Chr2	31074101	31074102	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5207556	5409227	2
Inversion	Chr11	17790715	18740084	OsKitaake11g145500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes