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Mutant Information

Mutant Name	FN3818-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3818-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7229835 T-A Hetero UTR_3_PRIME
SBS Chr1 14943930 C-T Hetero INTERGENIC
SBS Chr1 26974894 G-A Homo INTRON
SBS Chr1 35078674 C-T Hetero INTERGENIC
SBS Chr2 1374708 T-A Hetero INTERGENIC
SBS Chr2 33027400 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g339600
SBS Chr3 33777504 G-T Homo INTERGENIC
SBS Chr4 9214569 G-A Homo INTRON
SBS Chr4 10656660 G-T Homo INTERGENIC
SBS Chr5 4293073 C-T Homo INTERGENIC
SBS Chr5 22966684 G-A Hetero INTERGENIC
SBS Chr7 17785085 C-T Hetero INTERGENIC
SBS Chr8 17743795 A-T Hetero INTERGENIC
SBS Chr8 22948873 T-A Hetero INTERGENIC
SBS Chr8 27016987 C-A Hetero INTERGENIC
SBS Chr9 4652997 C-T Hetero INTERGENIC
SBS Chr9 12919420 G-A Hetero INTERGENIC
SBS Chr9 13267239 A-T Hetero INTERGENIC
SBS Chr9 22432351 A-G Hetero INTERGENIC
SBS Chr10 2041017 A-G Homo INTERGENIC
SBS Chr10 9842085 C-A Hetero INTERGENIC
SBS Chr11 10514896 A-T Homo INTERGENIC
SBS Chr11 14402449 G-A Homo INTERGENIC
SBS Chr12 1090932 G-A Hetero INTERGENIC
SBS Chr12 8232324 C-T Hetero INTERGENIC
SBS Chr12 10387178 G-A Hetero INTRON
SBS Chr12 12309570 C-T Hetero INTERGENIC
SBS Chr12 21834562 G-C Hetero INTERGENIC

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 60055 60062 7
Deletion Chr12 1504526 1504533 7
Deletion Chr2 2545810 2545817 7
Deletion Chr5 3095100 3095102 2
Deletion Chr4 5297016 5297032 16
Deletion Chr7 5806001 5905000 98999 9
Deletion Chr3 6779438 6779440 2
Deletion Chr9 14096395 14096396 1 OsKitaake09g094500
Deletion Chr3 14266371 14266374 3 OsKitaake03g186100
Deletion Chr8 14555721 14555736 15
Deletion Chr12 15157663 15157680 17
Deletion Chr2 15332923 15332927 4
Deletion Chr7 15512001 15517000 4999
Deletion Chr12 15940077 15940078 1
Deletion Chr12 16810732 16810738 6
Deletion Chr10 17080026 17080029 3
Deletion Chr2 17095060 17095061 1
Deletion Chr6 20204336 20204384 48
Deletion Chr5 21171243 21171260 17
Deletion Chr2 22702263 22702268 5
Deletion Chr8 22948850 22948862 12
Deletion Chr2 24866922 24866924 2
Deletion Chr4 24999387 24999413 26 OsKitaake04g167300
Deletion Chr3 25315852 25315853 1
Deletion Chr2 25479803 25479807 4
Deletion Chr6 26382126 26382127 1
Deletion Chr5 29401543 29401545 2
Deletion Chr1 34385488 34385489 1
Deletion Chr1 43429451 43429462 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 19521013 19521020 6
Insertion Chr4 19570406 19570412 5

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 18220569 18733482 OsKitaake08g135301
Inversion Chr8 18220574 18733487 OsKitaake08g135301

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7229835	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	14943930	C-T	Hetero	INTERGENIC
SBS	Chr1	26974894	G-A	Homo	INTRON
SBS	Chr1	35078674	C-T	Hetero	INTERGENIC
SBS	Chr2	1374708	T-A	Hetero	INTERGENIC
SBS	Chr2	33027400	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g339600
SBS	Chr3	33777504	G-T	Homo	INTERGENIC
SBS	Chr4	9214569	G-A	Homo	INTRON
SBS	Chr4	10656660	G-T	Homo	INTERGENIC
SBS	Chr5	4293073	C-T	Homo	INTERGENIC
SBS	Chr5	22966684	G-A	Hetero	INTERGENIC
SBS	Chr7	17785085	C-T	Hetero	INTERGENIC
SBS	Chr8	17743795	A-T	Hetero	INTERGENIC
SBS	Chr8	22948873	T-A	Hetero	INTERGENIC
SBS	Chr8	27016987	C-A	Hetero	INTERGENIC
SBS	Chr9	4652997	C-T	Hetero	INTERGENIC
SBS	Chr9	12919420	G-A	Hetero	INTERGENIC
SBS	Chr9	13267239	A-T	Hetero	INTERGENIC
SBS	Chr9	22432351	A-G	Hetero	INTERGENIC
SBS	Chr10	2041017	A-G	Homo	INTERGENIC
SBS	Chr10	9842085	C-A	Hetero	INTERGENIC
SBS	Chr11	10514896	A-T	Homo	INTERGENIC
SBS	Chr11	14402449	G-A	Homo	INTERGENIC
SBS	Chr12	1090932	G-A	Hetero	INTERGENIC
SBS	Chr12	8232324	C-T	Hetero	INTERGENIC
SBS	Chr12	10387178	G-A	Hetero	INTRON
SBS	Chr12	12309570	C-T	Hetero	INTERGENIC
SBS	Chr12	21834562	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	60055	60062	7
Deletion	Chr12	1504526	1504533	7
Deletion	Chr2	2545810	2545817	7
Deletion	Chr5	3095100	3095102	2
Deletion	Chr4	5297016	5297032	16
Deletion	Chr7	5806001	5905000	98999	9
Deletion	Chr3	6779438	6779440	2
Deletion	Chr9	14096395	14096396	1	OsKitaake09g094500
Deletion	Chr3	14266371	14266374	3	OsKitaake03g186100
Deletion	Chr8	14555721	14555736	15
Deletion	Chr12	15157663	15157680	17
Deletion	Chr2	15332923	15332927	4
Deletion	Chr7	15512001	15517000	4999
Deletion	Chr12	15940077	15940078	1
Deletion	Chr12	16810732	16810738	6
Deletion	Chr10	17080026	17080029	3
Deletion	Chr2	17095060	17095061	1
Deletion	Chr6	20204336	20204384	48
Deletion	Chr5	21171243	21171260	17
Deletion	Chr2	22702263	22702268	5
Deletion	Chr8	22948850	22948862	12
Deletion	Chr2	24866922	24866924	2
Deletion	Chr4	24999387	24999413	26	OsKitaake04g167300
Deletion	Chr3	25315852	25315853	1
Deletion	Chr2	25479803	25479807	4
Deletion	Chr6	26382126	26382127	1
Deletion	Chr5	29401543	29401545	2
Deletion	Chr1	34385488	34385489	1
Deletion	Chr1	43429451	43429462	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	18220569	18733482	OsKitaake08g135301
Inversion	Chr8	18220574	18733487	OsKitaake08g135301

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes