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Mutant Information

Mutant Name	FN3819-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3819-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5157770 A-G Hetero INTERGENIC
SBS Chr1 7818684 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g098100
SBS Chr1 25896521 G-T Hetero INTERGENIC
SBS Chr1 28540413 C-T Hetero INTERGENIC
SBS Chr1 33306201 T-C Hetero INTERGENIC
SBS Chr1 37567513 G-A Hetero INTERGENIC
SBS Chr1 41197862 T-A Hetero INTRON
SBS Chr2 717671 G-C Hetero INTRON
SBS Chr2 5676660 C-T Hetero INTERGENIC
SBS Chr2 15460564 C-T Hetero INTERGENIC
SBS Chr3 3406290 C-T Hetero INTERGENIC
SBS Chr3 29780936 T-C Hetero INTERGENIC
SBS Chr3 35064647 C-T Hetero INTERGENIC
SBS Chr4 5583557 G-A Hetero INTERGENIC
SBS Chr4 24191686 T-A Homo UTR_3_PRIME
SBS Chr4 28901794 C-T Hetero INTRON
SBS Chr5 4925472 C-T Hetero INTERGENIC
SBS Chr6 16987712 T-C Hetero INTERGENIC
SBS Chr6 17538484 C-G Hetero INTERGENIC
SBS Chr6 18900291 C-T Hetero UTR_5_PRIME
SBS Chr6 19278637 C-G Hetero INTERGENIC
SBS Chr7 19361580 A-T Hetero INTRON
SBS Chr8 13271239 C-T Hetero INTERGENIC
SBS Chr8 14151980 C-A Hetero UTR_5_PRIME
SBS Chr8 21506713 A-G Hetero INTERGENIC
SBS Chr8 23086243 G-A Hetero INTERGENIC
SBS Chr8 25237412 A-G Hetero INTERGENIC
SBS Chr8 26995393 C-T Hetero INTERGENIC
SBS Chr9 2188051 C-G Homo INTERGENIC
SBS Chr9 14593955 G-A Hetero INTRON
SBS Chr10 13738021 T-A Homo INTERGENIC
SBS Chr11 18595243 T-A Hetero INTERGENIC
SBS Chr11 20536305 C-T Hetero INTRON
SBS Chr12 15976685 G-T Hetero INTERGENIC
SBS Chr12 16655412 C-T Hetero INTERGENIC
SBS Chr12 18891926 C-T Hetero UTR_3_PRIME
SBS Chr12 21001379 C-T Hetero INTERGENIC
SBS Chr12 26559354 C-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 244997 244998 1
Deletion Chr3 5392476 5392482 6
Deletion Chr4 10560344 10560345 1
Deletion Chr5 14501749 14501750 1
Deletion Chr9 17290490 17290492 2
Deletion Chr9 17298429 17298431 2
Deletion Chr1 17716428 17716442 14
Deletion Chr8 19801340 19801341 1
Deletion Chr10 22090475 22090476 1
Deletion Chr3 24106274 24106278 4
Deletion Chr11 26299510 26299511 1
Deletion Chr4 29466001 29499000 32999 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6726470 6726473 2
Insertion Chr12 9372346 9372348 1
Insertion Chr7 11992111 11992113 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13466080 Chr1 41316894
Translocation Chr10 13473091 Chr1 41316893

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5157770	A-G	Hetero	INTERGENIC
SBS	Chr1	7818684	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g098100
SBS	Chr1	25896521	G-T	Hetero	INTERGENIC
SBS	Chr1	28540413	C-T	Hetero	INTERGENIC
SBS	Chr1	33306201	T-C	Hetero	INTERGENIC
SBS	Chr1	37567513	G-A	Hetero	INTERGENIC
SBS	Chr1	41197862	T-A	Hetero	INTRON
SBS	Chr2	717671	G-C	Hetero	INTRON
SBS	Chr2	5676660	C-T	Hetero	INTERGENIC
SBS	Chr2	15460564	C-T	Hetero	INTERGENIC
SBS	Chr3	3406290	C-T	Hetero	INTERGENIC
SBS	Chr3	29780936	T-C	Hetero	INTERGENIC
SBS	Chr3	35064647	C-T	Hetero	INTERGENIC
SBS	Chr4	5583557	G-A	Hetero	INTERGENIC
SBS	Chr4	24191686	T-A	Homo	UTR_3_PRIME
SBS	Chr4	28901794	C-T	Hetero	INTRON
SBS	Chr5	4925472	C-T	Hetero	INTERGENIC
SBS	Chr6	16987712	T-C	Hetero	INTERGENIC
SBS	Chr6	17538484	C-G	Hetero	INTERGENIC
SBS	Chr6	18900291	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	19278637	C-G	Hetero	INTERGENIC
SBS	Chr7	19361580	A-T	Hetero	INTRON
SBS	Chr8	13271239	C-T	Hetero	INTERGENIC
SBS	Chr8	14151980	C-A	Hetero	UTR_5_PRIME
SBS	Chr8	21506713	A-G	Hetero	INTERGENIC
SBS	Chr8	23086243	G-A	Hetero	INTERGENIC
SBS	Chr8	25237412	A-G	Hetero	INTERGENIC
SBS	Chr8	26995393	C-T	Hetero	INTERGENIC
SBS	Chr9	2188051	C-G	Homo	INTERGENIC
SBS	Chr9	14593955	G-A	Hetero	INTRON
SBS	Chr10	13738021	T-A	Homo	INTERGENIC
SBS	Chr11	18595243	T-A	Hetero	INTERGENIC
SBS	Chr11	20536305	C-T	Hetero	INTRON
SBS	Chr12	15976685	G-T	Hetero	INTERGENIC
SBS	Chr12	16655412	C-T	Hetero	INTERGENIC
SBS	Chr12	18891926	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	21001379	C-T	Hetero	INTERGENIC
SBS	Chr12	26559354	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	244997	244998	1
Deletion	Chr3	5392476	5392482	6
Deletion	Chr4	10560344	10560345	1
Deletion	Chr5	14501749	14501750	1
Deletion	Chr9	17290490	17290492	2
Deletion	Chr9	17298429	17298431	2
Deletion	Chr1	17716428	17716442	14
Deletion	Chr8	19801340	19801341	1
Deletion	Chr10	22090475	22090476	1
Deletion	Chr3	24106274	24106278	4
Deletion	Chr11	26299510	26299511	1
Deletion	Chr4	29466001	29499000	32999	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	13466080	Chr1	41316894
Translocation	Chr10	13473091	Chr1	41316893

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes