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Mutant Information

Mutant Name	FN3820-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3820-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 17370741 C-A Hetero INTERGENIC
SBS Chr2 25876278 C-T Hetero INTERGENIC
SBS Chr2 27194986 T-A Hetero INTRON
SBS Chr3 5154680 G-A Homo INTERGENIC
SBS Chr3 12577587 A-G Hetero INTRON
SBS Chr3 17599490 A-T Hetero INTERGENIC
SBS Chr3 34940424 C-A Hetero INTERGENIC
SBS Chr4 1699251 G-A Hetero INTERGENIC
SBS Chr4 7374735 G-A Hetero INTRON
SBS Chr4 21406736 G-A Hetero INTERGENIC
SBS Chr4 23511581 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 30464163 A-G Hetero INTERGENIC
SBS Chr4 34377301 C-T Hetero INTERGENIC
SBS Chr5 1825382 A-G Hetero INTERGENIC
SBS Chr5 19283262 C-T Homo INTERGENIC
SBS Chr5 24619218 T-C Homo INTERGENIC
SBS Chr5 24620030 G-T Homo INTERGENIC
SBS Chr5 24620031 A-T Homo INTERGENIC
SBS Chr5 25577928 A-T Hetero INTERGENIC
SBS Chr5 25947597 G-A Homo INTERGENIC
SBS Chr5 25989547 C-T Hetero INTERGENIC
SBS Chr6 2538016 C-T Hetero INTERGENIC
SBS Chr6 15074611 A-G Hetero INTERGENIC
SBS Chr6 16204275 G-A Hetero INTERGENIC
SBS Chr6 17812726 T-A Hetero INTERGENIC
SBS Chr6 18338764 C-T Hetero INTERGENIC
SBS Chr6 18338771 C-T Hetero INTERGENIC
SBS Chr7 14091253 C-G Hetero INTERGENIC
SBS Chr7 14091254 G-C Hetero INTERGENIC
SBS Chr7 20094143 A-C Homo INTERGENIC
SBS Chr7 20094147 T-A Homo INTERGENIC
SBS Chr8 8955217 C-T Hetero INTERGENIC
SBS Chr8 10081545 C-T Hetero INTERGENIC
SBS Chr8 13884500 T-A Hetero INTERGENIC
SBS Chr9 8207651 C-T Hetero INTERGENIC
SBS Chr9 17372584 C-T Hetero INTERGENIC
SBS Chr10 17584279 C-G Hetero INTERGENIC
SBS Chr12 16263618 T-C Hetero INTERGENIC
SBS Chr12 17355547 G-C Homo INTERGENIC
SBS Chr12 22428690 G-T Homo NON_SYNONYMOUS_CODING OsKitaake12g175900
SBS Chr12 24735307 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 233887 233899 12
Deletion Chr7 520001 1362000 841999 140
Deletion Chr7 1367001 1430000 62999 8
Deletion Chr7 1437001 1527000 89999 6
Deletion Chr1 12702116 12702123 7
Deletion Chr9 21420001 21579000 158999 35
Deletion Chr8 21512716 21512718 2
Deletion Chr10 23301526 23301542 16
Deletion Chr11 28950593 28950605 12
Deletion Chr4 35496686 35496697 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 19081673 19081675 1
Insertion Chr6 10473928 10473933 4
Insertion Chr10 19655096 19655098 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 17068573 17953233 OsKitaake09g126900
Inversion Chr9 21380775 21578418 OsKitaake09g189200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 15553443 Chr7 1612884 OsKitaake07g021800
Translocation Chr11 15553453 Chr7 1530700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	17370741	C-A	Hetero	INTERGENIC
SBS	Chr2	25876278	C-T	Hetero	INTERGENIC
SBS	Chr2	27194986	T-A	Hetero	INTRON
SBS	Chr3	5154680	G-A	Homo	INTERGENIC
SBS	Chr3	12577587	A-G	Hetero	INTRON
SBS	Chr3	17599490	A-T	Hetero	INTERGENIC
SBS	Chr3	34940424	C-A	Hetero	INTERGENIC
SBS	Chr4	1699251	G-A	Hetero	INTERGENIC
SBS	Chr4	7374735	G-A	Hetero	INTRON
SBS	Chr4	21406736	G-A	Hetero	INTERGENIC
SBS	Chr4	23511581	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	30464163	A-G	Hetero	INTERGENIC
SBS	Chr4	34377301	C-T	Hetero	INTERGENIC
SBS	Chr5	1825382	A-G	Hetero	INTERGENIC
SBS	Chr5	19283262	C-T	Homo	INTERGENIC
SBS	Chr5	24619218	T-C	Homo	INTERGENIC
SBS	Chr5	24620030	G-T	Homo	INTERGENIC
SBS	Chr5	24620031	A-T	Homo	INTERGENIC
SBS	Chr5	25577928	A-T	Hetero	INTERGENIC
SBS	Chr5	25947597	G-A	Homo	INTERGENIC
SBS	Chr5	25989547	C-T	Hetero	INTERGENIC
SBS	Chr6	2538016	C-T	Hetero	INTERGENIC
SBS	Chr6	15074611	A-G	Hetero	INTERGENIC
SBS	Chr6	16204275	G-A	Hetero	INTERGENIC
SBS	Chr6	17812726	T-A	Hetero	INTERGENIC
SBS	Chr6	18338764	C-T	Hetero	INTERGENIC
SBS	Chr6	18338771	C-T	Hetero	INTERGENIC
SBS	Chr7	14091253	C-G	Hetero	INTERGENIC
SBS	Chr7	14091254	G-C	Hetero	INTERGENIC
SBS	Chr7	20094143	A-C	Homo	INTERGENIC
SBS	Chr7	20094147	T-A	Homo	INTERGENIC
SBS	Chr8	8955217	C-T	Hetero	INTERGENIC
SBS	Chr8	10081545	C-T	Hetero	INTERGENIC
SBS	Chr8	13884500	T-A	Hetero	INTERGENIC
SBS	Chr9	8207651	C-T	Hetero	INTERGENIC
SBS	Chr9	17372584	C-T	Hetero	INTERGENIC
SBS	Chr10	17584279	C-G	Hetero	INTERGENIC
SBS	Chr12	16263618	T-C	Hetero	INTERGENIC
SBS	Chr12	17355547	G-C	Homo	INTERGENIC
SBS	Chr12	22428690	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g175900
SBS	Chr12	24735307	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	233887	233899	12
Deletion	Chr7	520001	1362000	841999	140
Deletion	Chr7	1367001	1430000	62999	8
Deletion	Chr7	1437001	1527000	89999	6
Deletion	Chr1	12702116	12702123	7
Deletion	Chr9	21420001	21579000	158999	35
Deletion	Chr8	21512716	21512718	2
Deletion	Chr10	23301526	23301542	16
Deletion	Chr11	28950593	28950605	12
Deletion	Chr4	35496686	35496697	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17068573	17953233	OsKitaake09g126900
Inversion	Chr9	21380775	21578418	OsKitaake09g189200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes