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Mutant Information

Mutant Name	FN3821-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3821-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4092930 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g054900
SBS Chr1 5873632 C-T Homo INTRON
SBS Chr1 14020999 A-G Homo INTERGENIC
SBS Chr1 37599149 A-G Hetero UTR_3_PRIME
SBS Chr2 4348182 C-T Homo INTRON
SBS Chr2 4348183 C-T Homo INTRON
SBS Chr2 21216536 T-A Hetero INTERGENIC
SBS Chr2 30305841 A-G Homo INTRON
SBS Chr2 37017652 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g397300
SBS Chr3 8848574 T-C Hetero INTRON
SBS Chr3 9402035 C-G Hetero INTERGENIC
SBS Chr3 10717387 G-T Hetero UTR_3_PRIME
SBS Chr3 12511914 A-T Homo INTERGENIC
SBS Chr3 22281019 G-A Homo INTERGENIC
SBS Chr3 26309855 T-C Homo INTERGENIC
SBS Chr3 33451182 C-T Homo SYNONYMOUS_CODING
SBS Chr3 37414762 G-A Hetero INTERGENIC
SBS Chr4 8412473 T-C Hetero INTERGENIC
SBS Chr4 11000396 C-A Hetero INTERGENIC
SBS Chr4 15657794 G-A Hetero INTERGENIC
SBS Chr4 15657795 G-T Hetero INTERGENIC
SBS Chr4 26334740 T-C Hetero INTERGENIC
SBS Chr4 29038454 A-T Hetero INTERGENIC
SBS Chr4 30308950 T-C Hetero INTERGENIC
SBS Chr4 32637851 G-T Hetero INTERGENIC
SBS Chr5 2585246 G-A Hetero INTERGENIC
SBS Chr5 18592102 G-A Hetero INTERGENIC
SBS Chr5 23430602 C-T Hetero UTR_3_PRIME
SBS Chr5 26688359 C-T Hetero INTERGENIC
SBS Chr6 8003382 A-T Hetero INTRON
SBS Chr6 8556741 A-T Hetero INTERGENIC
SBS Chr6 9000664 C-G Hetero INTERGENIC
SBS Chr7 21700341 G-A Hetero INTERGENIC
SBS Chr7 26307261 A-G Hetero INTERGENIC
SBS Chr8 2657131 G-T Hetero INTERGENIC
SBS Chr8 9784001 G-C Hetero INTERGENIC
SBS Chr8 21934742 A-G Hetero INTERGENIC
SBS Chr8 22732793 C-T Hetero INTERGENIC
SBS Chr9 789862 A-G Homo INTERGENIC
SBS Chr9 6419961 C-T Homo INTERGENIC
SBS Chr9 8431597 G-T Homo INTERGENIC
SBS Chr9 8632966 C-T Hetero INTERGENIC
SBS Chr9 8684253 G-A Hetero INTERGENIC
SBS Chr9 9329415 A-G Hetero INTRON
SBS Chr9 14404851 A-G Hetero INTERGENIC
SBS Chr9 20646967 G-A Hetero INTERGENIC
SBS Chr9 22116069 T-A Hetero INTERGENIC
SBS Chr9 22116070 C-T Hetero INTERGENIC
SBS Chr11 8246583 G-A Homo INTERGENIC
SBS Chr11 19741848 T-A Hetero INTERGENIC
SBS Chr11 22175850 T-A Hetero INTERGENIC
SBS Chr11 24385621 G-A Homo INTERGENIC
SBS Chr12 12319075 G-C Homo INTERGENIC
SBS Chr12 24813666 A-T Homo INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 449207 449216 9
Deletion Chr11 1064001 1256000 191999 27
Deletion Chr7 1775176 1775210 34 OsKitaake07g025001
Deletion Chr1 2172470 2172481 11
Deletion Chr7 2688666 2688674 8
Deletion Chr9 2919454 2919465 11
Deletion Chr4 3289863 3289882 19
Deletion Chr7 3805132 3805136 4
Deletion Chr10 4069983 4069984 1
Deletion Chr2 7420118 7420120 2
Deletion Chr9 7695427 7695433 6
Deletion Chr1 10135031 10135033 2
Deletion Chr5 12230438 12230452 14
Deletion Chr7 13724001 13729000 4999
Deletion Chr9 18616921 18616925 4 OsKitaake09g146800
Deletion Chr8 19281001 19467000 185999 11
Deletion Chr2 20364452 20364465 13
Deletion Chr4 20718884 20718887 3
Deletion Chr1 23008049 23008060 11 OsKitaake01g219200
Deletion Chr8 23147639 23147640 1
Deletion Chr2 24344458 24344472 14
Deletion Chr1 24603759 24603765 6 OsKitaake01g237700
Deletion Chr1 25572356 25572359 3
Deletion Chr1 26000645 26000647 2 OsKitaake01g252800
Deletion Chr1 32646269 32646272 3
Deletion Chr2 36993056 36993057 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5839666 5839669 2
Insertion Chr10 8598209 8598214 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 19273103 19690377 OsKitaake08g141550
Inversion Chr8 19467460 19690383

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4092930	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g054900
SBS	Chr1	5873632	C-T	Homo	INTRON
SBS	Chr1	14020999	A-G	Homo	INTERGENIC
SBS	Chr1	37599149	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	4348182	C-T	Homo	INTRON
SBS	Chr2	4348183	C-T	Homo	INTRON
SBS	Chr2	21216536	T-A	Hetero	INTERGENIC
SBS	Chr2	30305841	A-G	Homo	INTRON
SBS	Chr2	37017652	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g397300
SBS	Chr3	8848574	T-C	Hetero	INTRON
SBS	Chr3	9402035	C-G	Hetero	INTERGENIC
SBS	Chr3	10717387	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	12511914	A-T	Homo	INTERGENIC
SBS	Chr3	22281019	G-A	Homo	INTERGENIC
SBS	Chr3	26309855	T-C	Homo	INTERGENIC
SBS	Chr3	33451182	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	37414762	G-A	Hetero	INTERGENIC
SBS	Chr4	8412473	T-C	Hetero	INTERGENIC
SBS	Chr4	11000396	C-A	Hetero	INTERGENIC
SBS	Chr4	15657794	G-A	Hetero	INTERGENIC
SBS	Chr4	15657795	G-T	Hetero	INTERGENIC
SBS	Chr4	26334740	T-C	Hetero	INTERGENIC
SBS	Chr4	29038454	A-T	Hetero	INTERGENIC
SBS	Chr4	30308950	T-C	Hetero	INTERGENIC
SBS	Chr4	32637851	G-T	Hetero	INTERGENIC
SBS	Chr5	2585246	G-A	Hetero	INTERGENIC
SBS	Chr5	18592102	G-A	Hetero	INTERGENIC
SBS	Chr5	23430602	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	26688359	C-T	Hetero	INTERGENIC
SBS	Chr6	8003382	A-T	Hetero	INTRON
SBS	Chr6	8556741	A-T	Hetero	INTERGENIC
SBS	Chr6	9000664	C-G	Hetero	INTERGENIC
SBS	Chr7	21700341	G-A	Hetero	INTERGENIC
SBS	Chr7	26307261	A-G	Hetero	INTERGENIC
SBS	Chr8	2657131	G-T	Hetero	INTERGENIC
SBS	Chr8	9784001	G-C	Hetero	INTERGENIC
SBS	Chr8	21934742	A-G	Hetero	INTERGENIC
SBS	Chr8	22732793	C-T	Hetero	INTERGENIC
SBS	Chr9	789862	A-G	Homo	INTERGENIC
SBS	Chr9	6419961	C-T	Homo	INTERGENIC
SBS	Chr9	8431597	G-T	Homo	INTERGENIC
SBS	Chr9	8632966	C-T	Hetero	INTERGENIC
SBS	Chr9	8684253	G-A	Hetero	INTERGENIC
SBS	Chr9	9329415	A-G	Hetero	INTRON
SBS	Chr9	14404851	A-G	Hetero	INTERGENIC
SBS	Chr9	20646967	G-A	Hetero	INTERGENIC
SBS	Chr9	22116069	T-A	Hetero	INTERGENIC
SBS	Chr9	22116070	C-T	Hetero	INTERGENIC
SBS	Chr11	8246583	G-A	Homo	INTERGENIC
SBS	Chr11	19741848	T-A	Hetero	INTERGENIC
SBS	Chr11	22175850	T-A	Hetero	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC
SBS	Chr12	12319075	G-C	Homo	INTERGENIC
SBS	Chr12	24813666	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	449207	449216	9
Deletion	Chr11	1064001	1256000	191999	27
Deletion	Chr7	1775176	1775210	34	OsKitaake07g025001
Deletion	Chr1	2172470	2172481	11
Deletion	Chr7	2688666	2688674	8
Deletion	Chr9	2919454	2919465	11
Deletion	Chr4	3289863	3289882	19
Deletion	Chr7	3805132	3805136	4
Deletion	Chr10	4069983	4069984	1
Deletion	Chr2	7420118	7420120	2
Deletion	Chr9	7695427	7695433	6
Deletion	Chr1	10135031	10135033	2
Deletion	Chr5	12230438	12230452	14
Deletion	Chr7	13724001	13729000	4999
Deletion	Chr9	18616921	18616925	4	OsKitaake09g146800
Deletion	Chr8	19281001	19467000	185999	11
Deletion	Chr2	20364452	20364465	13
Deletion	Chr4	20718884	20718887	3
Deletion	Chr1	23008049	23008060	11	OsKitaake01g219200
Deletion	Chr8	23147639	23147640	1
Deletion	Chr2	24344458	24344472	14
Deletion	Chr1	24603759	24603765	6	OsKitaake01g237700
Deletion	Chr1	25572356	25572359	3
Deletion	Chr1	26000645	26000647	2	OsKitaake01g252800
Deletion	Chr1	32646269	32646272	3
Deletion	Chr2	36993056	36993057	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	19273103	19690377	OsKitaake08g141550
Inversion	Chr8	19467460	19690383

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes