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| Mutant Information |
|---|
| Mutant Name | FN3822-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3822-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1175686 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 4900909 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 15635310 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 17706377 | T-A | Homo | INTRON | |
| SBS | Chr1 | 38983213 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 4135580 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16805693 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 33598134 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 13903409 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 31947226 | T-A | Hetero | INTRON | |
| SBS | Chr4 | 18529007 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 22759437 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12891428 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 1274740 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16765695 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 1595126 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17140132 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13097236 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 18856950 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 6457512 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 16217782 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8055689 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 15357743 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15489532 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 5731643 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 14241795 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 21138913 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28764753 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 11907611 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 6989167 | 6989168 | 1 | |
| Deletion | Chr1 | 8889227 | 8889228 | 1 | OsKitaake01g111000 |
| Deletion | Chr12 | 11631001 | 11640000 | 8999 | |
| Deletion | Chr7 | 11992076 | 11992243 | 167 | |
| Deletion | Chr6 | 14820009 | 14820011 | 2 | |
| Deletion | Chr8 | 16215275 | 16215278 | 3 | |
| Deletion | Chr4 | 17065027 | 17065037 | 10 | |
| Deletion | Chr4 | 24091179 | 24091189 | 10 | |
| Deletion | Chr3 | 24133348 | 24133355 | 7 | |
| Deletion | Chr5 | 24344473 | 24344474 | 1 | |
| Deletion | Chr1 | 29015682 | 29015703 | 21 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 827195 | 827200 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 14227142 | 14612103 | |
| Inversion | Chr8 | 14227153 | 14612109 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 11236673 | Chr3 | 19313708 | |
| Translocation | Chr10 | 11236685 | Chr3 | 19313705 |