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Mutant Information

Mutant Name	FN3823-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3823-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12189216 G-A Homo INTERGENIC
SBS Chr1 28026923 C-G Homo INTERGENIC
SBS Chr1 28802518 T-A Homo INTERGENIC
SBS Chr1 40883787 G-T Homo INTERGENIC
SBS Chr1 42054926 G-C Hetero UTR_3_PRIME
SBS Chr1 44261305 C-A Hetero INTRON
SBS Chr2 36619370 C-A Homo INTRON
SBS Chr3 3280174 A-C Homo NON_SYNONYMOUS_CODING OsKitaake03g046200
SBS Chr3 22699500 G-A Hetero INTERGENIC
SBS Chr4 2318580 G-A Hetero INTERGENIC
SBS Chr4 19308344 C-T Hetero INTERGENIC
SBS Chr4 25027810 G-A Hetero INTERGENIC
SBS Chr5 8197920 T-C Hetero INTERGENIC
SBS Chr5 8197926 C-A Hetero INTERGENIC
SBS Chr5 10241478 G-T Hetero INTERGENIC
SBS Chr5 19889252 T-A Hetero INTERGENIC
SBS Chr6 5573902 G-T Hetero INTERGENIC
SBS Chr6 9531663 C-T Hetero INTERGENIC
SBS Chr7 8671671 A-G Hetero INTERGENIC
SBS Chr7 9978227 T-C Hetero INTERGENIC
SBS Chr7 12873904 C-T Hetero INTERGENIC
SBS Chr7 17773347 G-T Hetero INTERGENIC
SBS Chr7 26246093 G-A Homo INTERGENIC
SBS Chr7 27227263 G-A Homo INTERGENIC
SBS Chr8 5200640 G-A Hetero INTERGENIC
SBS Chr8 8209223 C-G Hetero INTERGENIC
SBS Chr8 9254646 T-C Hetero INTERGENIC
SBS Chr8 16476769 G-T Hetero INTERGENIC
SBS Chr8 19714332 A-G Homo INTERGENIC
SBS Chr9 13453692 G-A Hetero INTERGENIC
SBS Chr9 16307301 C-T Homo INTERGENIC
SBS Chr10 7337147 G-A Homo INTERGENIC
SBS Chr11 17390150 C-T Hetero INTERGENIC
SBS Chr11 17617007 C-T Hetero INTERGENIC
SBS Chr11 23152679 G-A Hetero INTERGENIC
SBS Chr11 23850925 G-A Hetero INTERGENIC
SBS Chr12 26440812 C-A Hetero INTERGENIC
SBS Chr12 26781851 T-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 4894001 4918000 23999 8
Deletion Chr6 7413686 7413690 4
Deletion Chr4 11372820 11372841 21
Deletion Chr1 13782837 13782839 2
Deletion Chr5 20355283 20355295 12
Deletion Chr2 22194876 22194878 2
Deletion Chr6 23884679 23884680 1
Deletion Chr6 26350609 26350611 2
Deletion Chr2 28190532 28190533 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 224070 224073 2
Insertion Chr2 23011427 23011430 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 9268009 10092949 OsKitaake08g084700
Inversion Chr1 42127231 42277590 OsKitaake01g465800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 5910619 Chr1 42277583 2
Translocation Chr10 5913476 Chr1 42127225 OsKitaake10g040500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12189216	G-A	Homo	INTERGENIC
SBS	Chr1	28026923	C-G	Homo	INTERGENIC
SBS	Chr1	28802518	T-A	Homo	INTERGENIC
SBS	Chr1	40883787	G-T	Homo	INTERGENIC
SBS	Chr1	42054926	G-C	Hetero	UTR_3_PRIME
SBS	Chr1	44261305	C-A	Hetero	INTRON
SBS	Chr2	36619370	C-A	Homo	INTRON
SBS	Chr3	3280174	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g046200
SBS	Chr3	22699500	G-A	Hetero	INTERGENIC
SBS	Chr4	2318580	G-A	Hetero	INTERGENIC
SBS	Chr4	19308344	C-T	Hetero	INTERGENIC
SBS	Chr4	25027810	G-A	Hetero	INTERGENIC
SBS	Chr5	8197920	T-C	Hetero	INTERGENIC
SBS	Chr5	8197926	C-A	Hetero	INTERGENIC
SBS	Chr5	10241478	G-T	Hetero	INTERGENIC
SBS	Chr5	19889252	T-A	Hetero	INTERGENIC
SBS	Chr6	5573902	G-T	Hetero	INTERGENIC
SBS	Chr6	9531663	C-T	Hetero	INTERGENIC
SBS	Chr7	8671671	A-G	Hetero	INTERGENIC
SBS	Chr7	9978227	T-C	Hetero	INTERGENIC
SBS	Chr7	12873904	C-T	Hetero	INTERGENIC
SBS	Chr7	17773347	G-T	Hetero	INTERGENIC
SBS	Chr7	26246093	G-A	Homo	INTERGENIC
SBS	Chr7	27227263	G-A	Homo	INTERGENIC
SBS	Chr8	5200640	G-A	Hetero	INTERGENIC
SBS	Chr8	8209223	C-G	Hetero	INTERGENIC
SBS	Chr8	9254646	T-C	Hetero	INTERGENIC
SBS	Chr8	16476769	G-T	Hetero	INTERGENIC
SBS	Chr8	19714332	A-G	Homo	INTERGENIC
SBS	Chr9	13453692	G-A	Hetero	INTERGENIC
SBS	Chr9	16307301	C-T	Homo	INTERGENIC
SBS	Chr10	7337147	G-A	Homo	INTERGENIC
SBS	Chr11	17390150	C-T	Hetero	INTERGENIC
SBS	Chr11	17617007	C-T	Hetero	INTERGENIC
SBS	Chr11	23152679	G-A	Hetero	INTERGENIC
SBS	Chr11	23850925	G-A	Hetero	INTERGENIC
SBS	Chr12	26440812	C-A	Hetero	INTERGENIC
SBS	Chr12	26781851	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	4894001	4918000	23999	8
Deletion	Chr6	7413686	7413690	4
Deletion	Chr4	11372820	11372841	21
Deletion	Chr1	13782837	13782839	2
Deletion	Chr5	20355283	20355295	12
Deletion	Chr2	22194876	22194878	2
Deletion	Chr6	23884679	23884680	1
Deletion	Chr6	26350609	26350611	2
Deletion	Chr2	28190532	28190533	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9268009	10092949	OsKitaake08g084700
Inversion	Chr1	42127231	42277590	OsKitaake01g465800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes