Search Kitaake

Mutant Information

Mutant Name	FN3824-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3824-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 65

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11226035 A-T Homo INTRON
SBS Chr1 16532095 C-T Hetero INTERGENIC
SBS Chr1 18560596 C-A Hetero INTERGENIC
SBS Chr1 18635659 G-C Hetero INTERGENIC
SBS Chr2 560481 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g008100
SBS Chr2 12650738 C-T Hetero INTERGENIC
SBS Chr2 13872769 A-T Hetero INTERGENIC
SBS Chr2 17702952 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 17811418 G-A Hetero INTERGENIC
SBS Chr2 18857333 T-C Hetero INTERGENIC
SBS Chr2 18913116 A-G Hetero UTR_3_PRIME
SBS Chr2 19579748 G-A Hetero INTERGENIC
SBS Chr3 415844 C-T Hetero UTR_5_PRIME
SBS Chr3 6378164 G-T Hetero INTERGENIC
SBS Chr3 6931679 A-G Hetero INTRON
SBS Chr3 9079291 G-A Hetero INTERGENIC
SBS Chr3 14116512 A-T Hetero INTERGENIC
SBS Chr3 16136744 G-A Hetero INTERGENIC
SBS Chr3 21109536 G-A Hetero INTERGENIC
SBS Chr4 1105694 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 2527463 C-A Hetero INTERGENIC
SBS Chr4 4640233 C-T Hetero INTERGENIC
SBS Chr4 9110891 C-G Hetero INTERGENIC
SBS Chr4 11512253 G-A Hetero INTERGENIC
SBS Chr4 11936095 C-T Hetero INTERGENIC
SBS Chr4 13323185 C-T Hetero INTERGENIC
SBS Chr4 14583084 G-A Hetero INTERGENIC
SBS Chr4 15240962 T-C Hetero INTERGENIC
SBS Chr4 16370390 C-A Hetero INTERGENIC
SBS Chr4 18493470 G-A Hetero INTERGENIC
SBS Chr4 25023242 C-T Homo UTR_3_PRIME
SBS Chr5 2476776 C-A Hetero INTERGENIC
SBS Chr5 4854419 A-G Hetero INTERGENIC
SBS Chr5 7233370 A-G Hetero INTERGENIC
SBS Chr5 18820802 C-A Homo INTERGENIC
SBS Chr5 22302832 C-A Hetero INTERGENIC
SBS Chr6 8803762 G-A Hetero INTERGENIC
SBS Chr6 27274446 G-T Hetero INTERGENIC
SBS Chr7 9639204 T-C Hetero INTERGENIC
SBS Chr8 3775228 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g042900
SBS Chr8 7253259 T-C Hetero INTERGENIC
SBS Chr8 8630987 T-A Hetero INTRON
SBS Chr8 15451358 G-A Hetero INTERGENIC
SBS Chr8 16684718 G-A Hetero INTERGENIC
SBS Chr8 19821283 C-T Hetero INTRON
SBS Chr8 25332682 A-T Homo NON_SYNONYMOUS_CODING OsKitaake08g198300
SBS Chr8 27479834 C-T Hetero INTERGENIC
SBS Chr9 15231259 C-T Hetero INTERGENIC
SBS Chr10 3165456 C-A Hetero INTRON
SBS Chr10 7360060 C-T Hetero INTERGENIC
SBS Chr10 12372199 G-A Hetero INTERGENIC
SBS Chr10 16273394 C-T Hetero INTERGENIC
SBS Chr10 16527681 T-A Homo INTERGENIC
SBS Chr10 17919585 G-T Hetero INTERGENIC
SBS Chr10 21631046 C-T Homo INTERGENIC
SBS Chr11 5254012 A-C Hetero INTRON
SBS Chr11 7012093 C-G Hetero INTRON
SBS Chr11 16662164 G-A Hetero INTERGENIC
SBS Chr11 27678405 C-T Hetero INTRON
SBS Chr12 2192703 C-T Hetero INTERGENIC
SBS Chr12 14043054 T-G Homo INTERGENIC
SBS Chr12 14242064 C-A Homo INTERGENIC
SBS Chr12 16395852 A-G Homo INTERGENIC
SBS Chr12 20965258 C-G Hetero INTERGENIC
SBS Chr12 24746247 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2201683 2201694 11
Deletion Chr8 2976632 2976642 10 OsKitaake08g032900
Deletion Chr9 3417727 3417728 1
Deletion Chr10 5201133 5201135 2
Deletion Chr4 7891001 7977000 85999 7
Deletion Chr8 11269547 11269548 1
Deletion Chr1 22565100 22565101 1
Deletion Chr3 27298292 27298296 4
Deletion Chr8 29145562 29145564 2
Deletion Chr6 29880792 29880810 18
Deletion Chr3 31698912 31698913 1 OsKitaake03g334100

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 34314750 34314753 2
Insertion Chr2 19456416 19456418 1
Insertion Chr4 14561603 14561606 2
Insertion Chr12 9782291 9782293 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 18315375 18785372

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5431393 Chr3 22490450 OsKitaake06g072700
Translocation Chr6 5432407 Chr3 22490390 OsKitaake06g072700
Translocation Chr4 7890633 Chr2 4170517 2
Translocation Chr9 18940652 Chr6 7501769 OsKitaake09g151200
Translocation Chr4 36087145 Chr2 4168925 OsKitaake02g058800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11226035	A-T	Homo	INTRON
SBS	Chr1	16532095	C-T	Hetero	INTERGENIC
SBS	Chr1	18560596	C-A	Hetero	INTERGENIC
SBS	Chr1	18635659	G-C	Hetero	INTERGENIC
SBS	Chr2	560481	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g008100
SBS	Chr2	12650738	C-T	Hetero	INTERGENIC
SBS	Chr2	13872769	A-T	Hetero	INTERGENIC
SBS	Chr2	17702952	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	17811418	G-A	Hetero	INTERGENIC
SBS	Chr2	18857333	T-C	Hetero	INTERGENIC
SBS	Chr2	18913116	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	19579748	G-A	Hetero	INTERGENIC
SBS	Chr3	415844	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	6378164	G-T	Hetero	INTERGENIC
SBS	Chr3	6931679	A-G	Hetero	INTRON
SBS	Chr3	9079291	G-A	Hetero	INTERGENIC
SBS	Chr3	14116512	A-T	Hetero	INTERGENIC
SBS	Chr3	16136744	G-A	Hetero	INTERGENIC
SBS	Chr3	21109536	G-A	Hetero	INTERGENIC
SBS	Chr4	1105694	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	2527463	C-A	Hetero	INTERGENIC
SBS	Chr4	4640233	C-T	Hetero	INTERGENIC
SBS	Chr4	9110891	C-G	Hetero	INTERGENIC
SBS	Chr4	11512253	G-A	Hetero	INTERGENIC
SBS	Chr4	11936095	C-T	Hetero	INTERGENIC
SBS	Chr4	13323185	C-T	Hetero	INTERGENIC
SBS	Chr4	14583084	G-A	Hetero	INTERGENIC
SBS	Chr4	15240962	T-C	Hetero	INTERGENIC
SBS	Chr4	16370390	C-A	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Hetero	INTERGENIC
SBS	Chr4	25023242	C-T	Homo	UTR_3_PRIME
SBS	Chr5	2476776	C-A	Hetero	INTERGENIC
SBS	Chr5	4854419	A-G	Hetero	INTERGENIC
SBS	Chr5	7233370	A-G	Hetero	INTERGENIC
SBS	Chr5	18820802	C-A	Homo	INTERGENIC
SBS	Chr5	22302832	C-A	Hetero	INTERGENIC
SBS	Chr6	8803762	G-A	Hetero	INTERGENIC
SBS	Chr6	27274446	G-T	Hetero	INTERGENIC
SBS	Chr7	9639204	T-C	Hetero	INTERGENIC
SBS	Chr8	3775228	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g042900
SBS	Chr8	7253259	T-C	Hetero	INTERGENIC
SBS	Chr8	8630987	T-A	Hetero	INTRON
SBS	Chr8	15451358	G-A	Hetero	INTERGENIC
SBS	Chr8	16684718	G-A	Hetero	INTERGENIC
SBS	Chr8	19821283	C-T	Hetero	INTRON
SBS	Chr8	25332682	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g198300
SBS	Chr8	27479834	C-T	Hetero	INTERGENIC
SBS	Chr9	15231259	C-T	Hetero	INTERGENIC
SBS	Chr10	3165456	C-A	Hetero	INTRON
SBS	Chr10	7360060	C-T	Hetero	INTERGENIC
SBS	Chr10	12372199	G-A	Hetero	INTERGENIC
SBS	Chr10	16273394	C-T	Hetero	INTERGENIC
SBS	Chr10	16527681	T-A	Homo	INTERGENIC
SBS	Chr10	17919585	G-T	Hetero	INTERGENIC
SBS	Chr10	21631046	C-T	Homo	INTERGENIC
SBS	Chr11	5254012	A-C	Hetero	INTRON
SBS	Chr11	7012093	C-G	Hetero	INTRON
SBS	Chr11	16662164	G-A	Hetero	INTERGENIC
SBS	Chr11	27678405	C-T	Hetero	INTRON
SBS	Chr12	2192703	C-T	Hetero	INTERGENIC
SBS	Chr12	14043054	T-G	Homo	INTERGENIC
SBS	Chr12	14242064	C-A	Homo	INTERGENIC
SBS	Chr12	16395852	A-G	Homo	INTERGENIC
SBS	Chr12	20965258	C-G	Hetero	INTERGENIC
SBS	Chr12	24746247	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2201683	2201694	11
Deletion	Chr8	2976632	2976642	10	OsKitaake08g032900
Deletion	Chr9	3417727	3417728	1
Deletion	Chr10	5201133	5201135	2
Deletion	Chr4	7891001	7977000	85999	7
Deletion	Chr8	11269547	11269548	1
Deletion	Chr1	22565100	22565101	1
Deletion	Chr3	27298292	27298296	4
Deletion	Chr8	29145562	29145564	2
Deletion	Chr6	29880792	29880810	18
Deletion	Chr3	31698912	31698913	1	OsKitaake03g334100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	18315375	18785372

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes