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| Mutant Information |
|---|
| Mutant Name | FN3825-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3825-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1577946 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g019400 |
| SBS | Chr1 | 9241812 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g118800 |
| SBS | Chr1 | 22413602 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 23373108 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25272593 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19081499 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 23492070 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 30102999 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15157205 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16933252 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 22962488 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34306703 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 36816980 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 5743564 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9650306 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 24259474 | C-G | Hetero | INTRON | |
| SBS | Chr5 | 25250801 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 28058232 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7311544 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g094400 |
| SBS | Chr6 | 10176115 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 11792486 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 25489746 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4259235 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 12757507 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 21215265 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22999258 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 12298303 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15754001 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 17256629 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 4171088 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14159932 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11408854 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11886891 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 13806567 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14948402 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19777624 | T-C | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 4947336 | 4947338 | 2 | |
| Deletion | Chr7 | 12158797 | 12158803 | 6 | |
| Deletion | Chr5 | 13520680 | 13520682 | 2 | |
| Deletion | Chr1 | 14183039 | 14183052 | 13 | |
| Deletion | Chr6 | 16010650 | 16010651 | 1 | |
| Deletion | Chr9 | 22410758 | 22410759 | 1 | |
| Deletion | Chr3 | 25115677 | 25115680 | 3 | |
| Deletion | Chr8 | 25680209 | 25680212 | 3 | OsKitaake08g203401 |
| Deletion | Chr11 | 26815676 | 26815678 | 2 | |
| Deletion | Chr8 | 27345440 | 27345447 | 7 | |
| Deletion | Chr8 | 27468425 | 27468440 | 15 | |
| Deletion | Chr8 | 27472553 | 27472555 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 27162950 | 27166343 | |
| Inversion | Chr3 | 27162951 | 27166348 |