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Mutant Information

Mutant Name	FN3826-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3826-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1419787 G-T Hetero INTERGENIC
SBS Chr1 12161645 T-C Hetero INTRON
SBS Chr1 16585207 T-C Homo INTERGENIC
SBS Chr1 25506952 T-A Hetero INTERGENIC
SBS Chr1 26607617 C-T Hetero INTERGENIC
SBS Chr1 29890814 C-T Hetero INTERGENIC
SBS Chr2 14762756 G-A Hetero INTERGENIC
SBS Chr2 18696111 G-T Hetero INTRON
SBS Chr2 25399088 C-T Hetero INTERGENIC
SBS Chr2 34958048 T-A Hetero INTRON
SBS Chr3 2136440 T-A Homo INTERGENIC
SBS Chr3 18459471 T-A Hetero INTERGENIC
SBS Chr3 27537510 G-A Hetero INTERGENIC
SBS Chr3 32991595 A-G Hetero INTERGENIC
SBS Chr3 35317012 A-G Homo INTRON
SBS Chr4 7182817 C-A Hetero INTERGENIC
SBS Chr4 14746029 C-G Hetero INTERGENIC
SBS Chr4 15193469 C-T Hetero INTERGENIC
SBS Chr5 4913945 T-C Hetero INTERGENIC
SBS Chr5 14047783 C-T Hetero INTERGENIC
SBS Chr5 27122460 A-T Hetero INTERGENIC
SBS Chr5 27122461 G-T Hetero INTERGENIC
SBS Chr5 27122462 C-T Hetero INTERGENIC
SBS Chr6 4113126 T-C Homo SYNONYMOUS_CODING
SBS Chr6 14902724 G-A Hetero INTERGENIC
SBS Chr7 3642900 C-A Hetero INTERGENIC
SBS Chr7 7184411 C-G Hetero INTERGENIC
SBS Chr7 25602136 A-T Hetero INTERGENIC
SBS Chr8 26334703 T-C Hetero INTERGENIC
SBS Chr9 508387 A-T Hetero INTRON
SBS Chr9 19389433 A-T Homo INTRON
SBS Chr10 17480736 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g119300
SBS Chr10 19516218 T-C Hetero INTERGENIC
SBS Chr11 6658579 G-A Homo INTERGENIC
SBS Chr11 8894203 G-A Homo INTERGENIC
SBS Chr11 19288608 T-A Hetero INTERGENIC
SBS Chr12 2372043 A-G Hetero INTERGENIC
SBS Chr12 2880222 T-A Hetero INTERGENIC
SBS Chr12 8425464 A-T Hetero INTRON
SBS Chr12 10794174 G-T Homo INTERGENIC
SBS Chr12 10794178 G-T Homo INTERGENIC
SBS Chr12 10794179 A-T Homo INTERGENIC
SBS Chr12 10794182 G-T Homo INTERGENIC
SBS Chr12 13425249 T-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2394002 2394009 7 OsKitaake06g031200
Deletion Chr12 2445216 2445217 1
Deletion Chr9 2522970 2522973 3
Deletion Chr2 8798389 8798391 2
Deletion Chr5 11090426 11090439 13 OsKitaake05g094500
Deletion Chr3 22766047 22766048 1
Deletion Chr7 23071265 23071268 3
Deletion Chr7 24833403 24833406 3 OsKitaake07g221900
Deletion Chr11 25275001 25546000 270999 33
Deletion Chr7 29473370 29473375 5 OsKitaake07g283800

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9464022 9464025 2
Insertion Chr2 19949582 19949586 3
Insertion Chr2 21197580 21197584 3
Insertion Chr3 37229502 37229504 1 OsKitaake03g417100
Insertion Chr8 19930653 19930656 2
Insertion Chr12 22216373 22216376 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 6658918 6691821 OsKitaake03g095000
Inversion Chr3 6658923 6691833 OsKitaake03g095000
Inversion Chr5 27135277 27138875
Inversion Chr5 27135280 27138881

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1419787	G-T	Hetero	INTERGENIC
SBS	Chr1	12161645	T-C	Hetero	INTRON
SBS	Chr1	16585207	T-C	Homo	INTERGENIC
SBS	Chr1	25506952	T-A	Hetero	INTERGENIC
SBS	Chr1	26607617	C-T	Hetero	INTERGENIC
SBS	Chr1	29890814	C-T	Hetero	INTERGENIC
SBS	Chr2	14762756	G-A	Hetero	INTERGENIC
SBS	Chr2	18696111	G-T	Hetero	INTRON
SBS	Chr2	25399088	C-T	Hetero	INTERGENIC
SBS	Chr2	34958048	T-A	Hetero	INTRON
SBS	Chr3	2136440	T-A	Homo	INTERGENIC
SBS	Chr3	18459471	T-A	Hetero	INTERGENIC
SBS	Chr3	27537510	G-A	Hetero	INTERGENIC
SBS	Chr3	32991595	A-G	Hetero	INTERGENIC
SBS	Chr3	35317012	A-G	Homo	INTRON
SBS	Chr4	7182817	C-A	Hetero	INTERGENIC
SBS	Chr4	14746029	C-G	Hetero	INTERGENIC
SBS	Chr4	15193469	C-T	Hetero	INTERGENIC
SBS	Chr5	4913945	T-C	Hetero	INTERGENIC
SBS	Chr5	14047783	C-T	Hetero	INTERGENIC
SBS	Chr5	27122460	A-T	Hetero	INTERGENIC
SBS	Chr5	27122461	G-T	Hetero	INTERGENIC
SBS	Chr5	27122462	C-T	Hetero	INTERGENIC
SBS	Chr6	4113126	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr6	14902724	G-A	Hetero	INTERGENIC
SBS	Chr7	3642900	C-A	Hetero	INTERGENIC
SBS	Chr7	7184411	C-G	Hetero	INTERGENIC
SBS	Chr7	25602136	A-T	Hetero	INTERGENIC
SBS	Chr8	26334703	T-C	Hetero	INTERGENIC
SBS	Chr9	508387	A-T	Hetero	INTRON
SBS	Chr9	19389433	A-T	Homo	INTRON
SBS	Chr10	17480736	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g119300
SBS	Chr10	19516218	T-C	Hetero	INTERGENIC
SBS	Chr11	6658579	G-A	Homo	INTERGENIC
SBS	Chr11	8894203	G-A	Homo	INTERGENIC
SBS	Chr11	19288608	T-A	Hetero	INTERGENIC
SBS	Chr12	2372043	A-G	Hetero	INTERGENIC
SBS	Chr12	2880222	T-A	Hetero	INTERGENIC
SBS	Chr12	8425464	A-T	Hetero	INTRON
SBS	Chr12	10794174	G-T	Homo	INTERGENIC
SBS	Chr12	10794178	G-T	Homo	INTERGENIC
SBS	Chr12	10794179	A-T	Homo	INTERGENIC
SBS	Chr12	10794182	G-T	Homo	INTERGENIC
SBS	Chr12	13425249	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2394002	2394009	7	OsKitaake06g031200
Deletion	Chr12	2445216	2445217	1
Deletion	Chr9	2522970	2522973	3
Deletion	Chr2	8798389	8798391	2
Deletion	Chr5	11090426	11090439	13	OsKitaake05g094500
Deletion	Chr3	22766047	22766048	1
Deletion	Chr7	23071265	23071268	3
Deletion	Chr7	24833403	24833406	3	OsKitaake07g221900
Deletion	Chr11	25275001	25546000	270999	33
Deletion	Chr7	29473370	29473375	5	OsKitaake07g283800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6658918	6691821	OsKitaake03g095000
Inversion	Chr3	6658923	6691833	OsKitaake03g095000
Inversion	Chr5	27135277	27138875
Inversion	Chr5	27135280	27138881

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes