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| Mutant Information |
|---|
| Mutant Name | FN3827-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3827-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17451239 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 18792988 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34213816 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19926014 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23977888 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35400371 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 3453238 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14248662 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 14263894 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 18197136 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22973849 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 13094314 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13821725 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 16466348 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 23975457 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 2366221 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 3007159 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 5567506 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 7567469 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26978725 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g251700 |
| SBS | Chr8 | 28627825 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10448966 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 525633 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 8509864 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 10165329 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24563919 | C-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 655333 | 655338 | 5 | |
| Deletion | Chr11 | 2701348 | 2701362 | 14 | OsKitaake11g038400 |
| Deletion | Chr6 | 2815307 | 2815310 | 3 | |
| Deletion | Chr1 | 4053688 | 4054009 | 321 | |
| Deletion | Chr8 | 8125092 | 8125218 | 126 | OsKitaake08g074300 |
| Deletion | Chr1 | 8171420 | 8171423 | 3 | |
| Deletion | Chr5 | 17987434 | 17987444 | 10 | |
| Deletion | Chr8 | 19337958 | 19337965 | 7 | |
| Deletion | Chr6 | 28254918 | 28254919 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 29388298 | 29388301 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 16828989 | Chr2 | 19938707 | |
| Translocation | Chr6 | 16828996 | Chr2 | 19939036 |