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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN3828-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3828-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21024906 C-A Hetero INTERGENIC
SBS Chr1 22453401 G-A Homo INTERGENIC
SBS Chr1 27449235 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g267100
SBS Chr1 27449236 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 34156221 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 40129794 C-T Hetero INTRON
SBS Chr1 41167895 G-A Hetero INTERGENIC
SBS Chr2 15508801 C-T Hetero INTERGENIC
SBS Chr3 19481431 C-T Hetero INTERGENIC
SBS Chr3 25500029 G-A Hetero UTR_5_PRIME
SBS Chr3 37165774 T-A Hetero INTRON
SBS Chr3 37165775 T-A Hetero INTRON
SBS Chr4 22958475 A-T Hetero INTERGENIC
SBS Chr4 33719081 C-G Homo INTERGENIC
SBS Chr5 3751221 G-C Hetero INTRON
SBS Chr5 21434405 G-A Hetero INTERGENIC
SBS Chr5 25952415 T-C Hetero INTERGENIC
SBS Chr6 8790099 G-A Homo INTERGENIC
SBS Chr6 15301965 C-G Hetero INTERGENIC
SBS Chr7 683566 C-T Hetero INTERGENIC
SBS Chr7 3588884 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 27908316 G-T Homo STOP_GAINED OsKitaake07g261600
SBS Chr8 1796796 G-T Homo INTERGENIC
SBS Chr8 5150125 C-T Hetero INTERGENIC
SBS Chr8 18081738 C-T Hetero INTERGENIC
SBS Chr9 12962578 T-C Hetero INTERGENIC
SBS Chr9 14715809 G-T Hetero INTERGENIC
SBS Chr10 9343961 G-T Hetero INTERGENIC
SBS Chr10 13552496 C-T Hetero INTERGENIC
SBS Chr10 21123215 G-T Homo INTERGENIC
SBS Chr11 8301360 T-C Hetero INTRON
SBS Chr11 8301363 T-A Hetero INTRON
SBS Chr11 12702431 C-A Hetero UTR_3_PRIME
SBS Chr11 18246147 C-A Hetero INTERGENIC
SBS Chr11 29530273 G-A Hetero INTERGENIC
SBS Chr12 6729102 G-A Hetero INTERGENIC
SBS Chr12 12712069 T-C Hetero INTERGENIC
SBS Chr12 24482849 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g197500

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 537636 537643 7
Deletion Chr2 4257821 4257826 5
Deletion Chr6 13753022 13753024 2
Deletion Chr6 22347407 22347412 5
Deletion Chr3 26560001 26591000 30999 3
Deletion Chr3 26623114 26623118 4
Deletion Chr3 26710346 26710352 6
Deletion Chr6 27595940 27595943 3
Deletion Chr4 35855373 35855382 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16744382 16744384 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 17405627 Chr7 7127047

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21024906	C-A	Hetero	INTERGENIC
SBS	Chr1	22453401	G-A	Homo	INTERGENIC
SBS	Chr1	27449235	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g267100
SBS	Chr1	27449236	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	34156221	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	40129794	C-T	Hetero	INTRON
SBS	Chr1	41167895	G-A	Hetero	INTERGENIC
SBS	Chr2	15508801	C-T	Hetero	INTERGENIC
SBS	Chr3	19481431	C-T	Hetero	INTERGENIC
SBS	Chr3	25500029	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	37165774	T-A	Hetero	INTRON
SBS	Chr3	37165775	T-A	Hetero	INTRON
SBS	Chr4	22958475	A-T	Hetero	INTERGENIC
SBS	Chr4	33719081	C-G	Homo	INTERGENIC
SBS	Chr5	3751221	G-C	Hetero	INTRON
SBS	Chr5	21434405	G-A	Hetero	INTERGENIC
SBS	Chr5	25952415	T-C	Hetero	INTERGENIC
SBS	Chr6	8790099	G-A	Homo	INTERGENIC
SBS	Chr6	15301965	C-G	Hetero	INTERGENIC
SBS	Chr7	683566	C-T	Hetero	INTERGENIC
SBS	Chr7	3588884	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	27908316	G-T	Homo	STOP_GAINED	OsKitaake07g261600
SBS	Chr8	1796796	G-T	Homo	INTERGENIC
SBS	Chr8	5150125	C-T	Hetero	INTERGENIC
SBS	Chr8	18081738	C-T	Hetero	INTERGENIC
SBS	Chr9	12962578	T-C	Hetero	INTERGENIC
SBS	Chr9	14715809	G-T	Hetero	INTERGENIC
SBS	Chr10	9343961	G-T	Hetero	INTERGENIC
SBS	Chr10	13552496	C-T	Hetero	INTERGENIC
SBS	Chr10	21123215	G-T	Homo	INTERGENIC
SBS	Chr11	8301360	T-C	Hetero	INTRON
SBS	Chr11	8301363	T-A	Hetero	INTRON
SBS	Chr11	12702431	C-A	Hetero	UTR_3_PRIME
SBS	Chr11	18246147	C-A	Hetero	INTERGENIC
SBS	Chr11	29530273	G-A	Hetero	INTERGENIC
SBS	Chr12	6729102	G-A	Hetero	INTERGENIC
SBS	Chr12	12712069	T-C	Hetero	INTERGENIC
SBS	Chr12	24482849	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g197500

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	537636	537643	7
Deletion	Chr2	4257821	4257826	5
Deletion	Chr6	13753022	13753024	2
Deletion	Chr6	22347407	22347412	5
Deletion	Chr3	26560001	26591000	30999	3
Deletion	Chr3	26623114	26623118	4
Deletion	Chr3	26710346	26710352	6
Deletion	Chr6	27595940	27595943	3
Deletion	Chr4	35855373	35855382	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	17405627	Chr7	7127047

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes