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Mutant Information

Mutant Name	FN3829-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3829-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8480457 T-A Hetero INTERGENIC
SBS Chr1 14059213 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 14989835 C-T Hetero INTERGENIC
SBS Chr1 17550657 T-C Homo INTERGENIC
SBS Chr1 23237935 A-G Homo INTERGENIC
SBS Chr1 28502495 C-T Hetero INTERGENIC
SBS Chr1 35645063 T-A Hetero INTERGENIC
SBS Chr2 8920017 T-A Hetero INTERGENIC
SBS Chr2 18113607 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g180200
SBS Chr2 24885282 G-A Hetero INTERGENIC
SBS Chr3 10667318 G-A Hetero INTERGENIC
SBS Chr3 15179650 C-T Homo INTERGENIC
SBS Chr3 24299077 C-T Hetero INTERGENIC
SBS Chr3 35695586 G-A Hetero INTERGENIC
SBS Chr3 37521407 G-A Hetero INTERGENIC
SBS Chr4 735633 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g005900
SBS Chr4 6645744 T-A Hetero INTERGENIC
SBS Chr4 8146349 C-T Hetero INTERGENIC
SBS Chr4 11266629 G-A Hetero INTERGENIC
SBS Chr4 16025945 C-G Hetero INTERGENIC
SBS Chr4 23832420 C-T Hetero INTERGENIC
SBS Chr4 33369787 G-C Hetero INTERGENIC
SBS Chr5 5749906 C-T Homo INTRON
SBS Chr5 16578814 C-T Hetero INTERGENIC
SBS Chr6 519727 A-T Hetero INTERGENIC
SBS Chr6 4330729 T-C Hetero INTERGENIC
SBS Chr6 4526710 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g062400
SBS Chr6 8267926 A-G Hetero INTERGENIC
SBS Chr6 18737460 C-A Hetero INTERGENIC
SBS Chr7 9312313 C-T Hetero INTERGENIC
SBS Chr7 13306526 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g117600
SBS Chr7 20039973 A-G Hetero INTRON
SBS Chr7 26202407 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g240400
SBS Chr7 27250193 G-A Hetero INTERGENIC
SBS Chr8 11257788 C-A Hetero INTERGENIC
SBS Chr8 12055518 C-A Hetero INTERGENIC
SBS Chr8 20848419 C-T Hetero INTERGENIC
SBS Chr9 2947344 G-T Hetero INTERGENIC
SBS Chr9 12064149 C-T Hetero INTRON
SBS Chr10 9976089 G-A Hetero INTERGENIC
SBS Chr10 16357484 G-A Hetero INTERGENIC
SBS Chr11 11243532 A-C Homo INTERGENIC
SBS Chr12 1294103 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 1294118 A-C Hetero SYNONYMOUS_CODING
SBS Chr12 3422763 C-G Homo INTERGENIC
SBS Chr12 26390667 A-G Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2503383 2503392 9
Deletion Chr3 3723042 3723049 7
Deletion Chr4 4579205 4579206 1
Deletion Chr7 8697001 8816000 118999 10
Deletion Chr3 9730362 9730369 7 OsKitaake03g132400
Deletion Chr7 11991294 11991296 2
Deletion Chr4 12638220 12638223 3
Deletion Chr9 14380511 14380513 2
Deletion Chr5 14408877 14408879 2
Deletion Chr5 15250814 15250817 3
Deletion Chr11 15916562 15916573 11
Deletion Chr9 16912451 16912520 69
Deletion Chr3 18189054 18189060 6
Deletion Chr12 19826772 19826774 2
Deletion Chr2 20495787 20495788 1
Deletion Chr3 22142927 22142937 10
Deletion Chr12 23229001 23247000 17999 3
Deletion Chr1 35607726 35607730 4
Deletion Chr1 40635001 40647000 11999 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 21974770 21974774 3
Insertion Chr11 16956021 16956023 1
Insertion Chr11 3383179 3383181 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 9361648 10155572
Inversion Chr5 9361661 10155573

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8480457	T-A	Hetero	INTERGENIC
SBS	Chr1	14059213	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	14989835	C-T	Hetero	INTERGENIC
SBS	Chr1	17550657	T-C	Homo	INTERGENIC
SBS	Chr1	23237935	A-G	Homo	INTERGENIC
SBS	Chr1	28502495	C-T	Hetero	INTERGENIC
SBS	Chr1	35645063	T-A	Hetero	INTERGENIC
SBS	Chr2	8920017	T-A	Hetero	INTERGENIC
SBS	Chr2	18113607	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g180200
SBS	Chr2	24885282	G-A	Hetero	INTERGENIC
SBS	Chr3	10667318	G-A	Hetero	INTERGENIC
SBS	Chr3	15179650	C-T	Homo	INTERGENIC
SBS	Chr3	24299077	C-T	Hetero	INTERGENIC
SBS	Chr3	35695586	G-A	Hetero	INTERGENIC
SBS	Chr3	37521407	G-A	Hetero	INTERGENIC
SBS	Chr4	735633	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g005900
SBS	Chr4	6645744	T-A	Hetero	INTERGENIC
SBS	Chr4	8146349	C-T	Hetero	INTERGENIC
SBS	Chr4	11266629	G-A	Hetero	INTERGENIC
SBS	Chr4	16025945	C-G	Hetero	INTERGENIC
SBS	Chr4	23832420	C-T	Hetero	INTERGENIC
SBS	Chr4	33369787	G-C	Hetero	INTERGENIC
SBS	Chr5	5749906	C-T	Homo	INTRON
SBS	Chr5	16578814	C-T	Hetero	INTERGENIC
SBS	Chr6	519727	A-T	Hetero	INTERGENIC
SBS	Chr6	4330729	T-C	Hetero	INTERGENIC
SBS	Chr6	4526710	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g062400
SBS	Chr6	8267926	A-G	Hetero	INTERGENIC
SBS	Chr6	18737460	C-A	Hetero	INTERGENIC
SBS	Chr7	9312313	C-T	Hetero	INTERGENIC
SBS	Chr7	13306526	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g117600
SBS	Chr7	20039973	A-G	Hetero	INTRON
SBS	Chr7	26202407	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g240400
SBS	Chr7	27250193	G-A	Hetero	INTERGENIC
SBS	Chr8	11257788	C-A	Hetero	INTERGENIC
SBS	Chr8	12055518	C-A	Hetero	INTERGENIC
SBS	Chr8	20848419	C-T	Hetero	INTERGENIC
SBS	Chr9	2947344	G-T	Hetero	INTERGENIC
SBS	Chr9	12064149	C-T	Hetero	INTRON
SBS	Chr10	9976089	G-A	Hetero	INTERGENIC
SBS	Chr10	16357484	G-A	Hetero	INTERGENIC
SBS	Chr11	11243532	A-C	Homo	INTERGENIC
SBS	Chr12	1294103	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	1294118	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	3422763	C-G	Homo	INTERGENIC
SBS	Chr12	26390667	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2503383	2503392	9
Deletion	Chr3	3723042	3723049	7
Deletion	Chr4	4579205	4579206	1
Deletion	Chr7	8697001	8816000	118999	10
Deletion	Chr3	9730362	9730369	7	OsKitaake03g132400
Deletion	Chr7	11991294	11991296	2
Deletion	Chr4	12638220	12638223	3
Deletion	Chr9	14380511	14380513	2
Deletion	Chr5	14408877	14408879	2
Deletion	Chr5	15250814	15250817	3
Deletion	Chr11	15916562	15916573	11
Deletion	Chr9	16912451	16912520	69
Deletion	Chr3	18189054	18189060	6
Deletion	Chr12	19826772	19826774	2
Deletion	Chr2	20495787	20495788	1
Deletion	Chr3	22142927	22142937	10
Deletion	Chr12	23229001	23247000	17999	3
Deletion	Chr1	35607726	35607730	4
Deletion	Chr1	40635001	40647000	11999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	9361648	10155572
Inversion	Chr5	9361661	10155573

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes