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Mutant Information

Mutant Name	FN3830-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3830-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5087914 C-T Hetero INTERGENIC
SBS Chr1 20840103 C-T Hetero INTERGENIC
SBS Chr1 25133550 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g243300
SBS Chr1 37564082 G-T Hetero INTERGENIC
SBS Chr1 37697040 G-T Hetero INTERGENIC
SBS Chr1 39668003 G-A Hetero UTR_3_PRIME
SBS Chr2 323649 A-T Homo INTERGENIC
SBS Chr2 6048741 C-T Hetero INTERGENIC
SBS Chr2 8098613 G-A Hetero UTR_3_PRIME
SBS Chr2 16838656 G-A Hetero INTERGENIC
SBS Chr2 16939250 C-T Hetero INTERGENIC
SBS Chr2 17980132 C-T Hetero INTRON
SBS Chr2 34228650 A-C Hetero INTERGENIC
SBS Chr3 11904371 G-C Hetero INTERGENIC
SBS Chr3 16715080 T-C Hetero INTRON
SBS Chr4 4182691 T-A Hetero INTERGENIC
SBS Chr4 10183076 T-C Hetero INTERGENIC
SBS Chr4 13461356 C-T Hetero INTERGENIC
SBS Chr4 16348355 G-A Hetero INTERGENIC
SBS Chr4 26973538 G-T Hetero INTERGENIC
SBS Chr4 35908770 T-A Homo INTRON
SBS Chr5 17794925 T-A Hetero INTERGENIC
SBS Chr6 16204301 T-C Homo INTERGENIC
SBS Chr6 18316789 G-A Hetero INTERGENIC
SBS Chr6 21644903 G-T Hetero INTERGENIC
SBS Chr7 1431860 C-T Hetero INTERGENIC
SBS Chr7 1436626 C-T Hetero INTERGENIC
SBS Chr7 5376781 C-T Homo INTERGENIC
SBS Chr7 15527915 A-G Hetero INTERGENIC
SBS Chr7 15528881 T-A Hetero INTERGENIC
SBS Chr7 16910632 C-T Hetero INTERGENIC
SBS Chr7 26295989 T-C Hetero INTERGENIC
SBS Chr8 5096810 C-A Hetero INTERGENIC
SBS Chr8 9224942 C-T Hetero INTERGENIC
SBS Chr8 13430664 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g110420
SBS Chr8 17646797 T-C Hetero INTERGENIC
SBS Chr8 19200390 G-A Hetero INTERGENIC
SBS Chr8 21858206 T-A Hetero INTERGENIC
SBS Chr8 22876904 C-T Hetero INTERGENIC
SBS Chr9 2470759 T-C Hetero INTERGENIC
SBS Chr9 4432602 T-A Hetero INTERGENIC
SBS Chr9 18377088 G-A Hetero INTERGENIC
SBS Chr10 232902 G-A Hetero INTERGENIC
SBS Chr10 15748984 T-A Hetero INTRON
SBS Chr10 17405666 A-G Hetero INTERGENIC
SBS Chr10 17537835 C-T Hetero INTERGENIC
SBS Chr11 7846071 C-G Hetero INTERGENIC
SBS Chr11 18012262 A-C Hetero INTERGENIC
SBS Chr11 25345183 A-G Homo INTRON
SBS Chr12 1437286 C-T Hetero INTERGENIC
SBS Chr12 7003533 G-A Hetero INTERGENIC
SBS Chr12 7974621 T-C Hetero INTERGENIC
SBS Chr12 16763944 C-T Hetero INTERGENIC
SBS Chr12 17525425 G-A Hetero INTERGENIC
SBS Chr12 18646901 C-A Hetero INTERGENIC
SBS Chr12 20991002 T-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 821145 821147 2
Deletion Chr11 4411203 4411206 3
Deletion Chr4 5433827 5433834 7
Deletion Chr5 6869311 6869313 2
Deletion Chr3 9742646 9742652 6
Deletion Chr10 10441024 10441027 3
Deletion Chr6 11899359 11899361 2
Deletion Chr1 13462001 13478000 15999 2
Deletion Chr9 13889670 13889679 9
Deletion Chr12 14631826 14631845 19
Deletion Chr6 15070290 15070291 1
Deletion Chr10 17572792 17572793 1
Deletion Chr8 23682673 23682681 8
Deletion Chr2 33420491 33420493 2
Deletion Chr1 34983701 34983703 2
Deletion Chr1 43403001 43596000 192999 34

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24393479 24393482 2
Insertion Chr6 20348341 20348348 6
Insertion Chr9 7117534 7117537 2
Insertion Chr9 20824956 20824959 2
Insertion Chr10 7363173 7363176 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5087914	C-T	Hetero	INTERGENIC
SBS	Chr1	20840103	C-T	Hetero	INTERGENIC
SBS	Chr1	25133550	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g243300
SBS	Chr1	37564082	G-T	Hetero	INTERGENIC
SBS	Chr1	37697040	G-T	Hetero	INTERGENIC
SBS	Chr1	39668003	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	323649	A-T	Homo	INTERGENIC
SBS	Chr2	6048741	C-T	Hetero	INTERGENIC
SBS	Chr2	8098613	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	16838656	G-A	Hetero	INTERGENIC
SBS	Chr2	16939250	C-T	Hetero	INTERGENIC
SBS	Chr2	17980132	C-T	Hetero	INTRON
SBS	Chr2	34228650	A-C	Hetero	INTERGENIC
SBS	Chr3	11904371	G-C	Hetero	INTERGENIC
SBS	Chr3	16715080	T-C	Hetero	INTRON
SBS	Chr4	4182691	T-A	Hetero	INTERGENIC
SBS	Chr4	10183076	T-C	Hetero	INTERGENIC
SBS	Chr4	13461356	C-T	Hetero	INTERGENIC
SBS	Chr4	16348355	G-A	Hetero	INTERGENIC
SBS	Chr4	26973538	G-T	Hetero	INTERGENIC
SBS	Chr4	35908770	T-A	Homo	INTRON
SBS	Chr5	17794925	T-A	Hetero	INTERGENIC
SBS	Chr6	16204301	T-C	Homo	INTERGENIC
SBS	Chr6	18316789	G-A	Hetero	INTERGENIC
SBS	Chr6	21644903	G-T	Hetero	INTERGENIC
SBS	Chr7	1431860	C-T	Hetero	INTERGENIC
SBS	Chr7	1436626	C-T	Hetero	INTERGENIC
SBS	Chr7	5376781	C-T	Homo	INTERGENIC
SBS	Chr7	15527915	A-G	Hetero	INTERGENIC
SBS	Chr7	15528881	T-A	Hetero	INTERGENIC
SBS	Chr7	16910632	C-T	Hetero	INTERGENIC
SBS	Chr7	26295989	T-C	Hetero	INTERGENIC
SBS	Chr8	5096810	C-A	Hetero	INTERGENIC
SBS	Chr8	9224942	C-T	Hetero	INTERGENIC
SBS	Chr8	13430664	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g110420
SBS	Chr8	17646797	T-C	Hetero	INTERGENIC
SBS	Chr8	19200390	G-A	Hetero	INTERGENIC
SBS	Chr8	21858206	T-A	Hetero	INTERGENIC
SBS	Chr8	22876904	C-T	Hetero	INTERGENIC
SBS	Chr9	2470759	T-C	Hetero	INTERGENIC
SBS	Chr9	4432602	T-A	Hetero	INTERGENIC
SBS	Chr9	18377088	G-A	Hetero	INTERGENIC
SBS	Chr10	232902	G-A	Hetero	INTERGENIC
SBS	Chr10	15748984	T-A	Hetero	INTRON
SBS	Chr10	17405666	A-G	Hetero	INTERGENIC
SBS	Chr10	17537835	C-T	Hetero	INTERGENIC
SBS	Chr11	7846071	C-G	Hetero	INTERGENIC
SBS	Chr11	18012262	A-C	Hetero	INTERGENIC
SBS	Chr11	25345183	A-G	Homo	INTRON
SBS	Chr12	1437286	C-T	Hetero	INTERGENIC
SBS	Chr12	7003533	G-A	Hetero	INTERGENIC
SBS	Chr12	7974621	T-C	Hetero	INTERGENIC
SBS	Chr12	16763944	C-T	Hetero	INTERGENIC
SBS	Chr12	17525425	G-A	Hetero	INTERGENIC
SBS	Chr12	18646901	C-A	Hetero	INTERGENIC
SBS	Chr12	20991002	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	821145	821147	2
Deletion	Chr11	4411203	4411206	3
Deletion	Chr4	5433827	5433834	7
Deletion	Chr5	6869311	6869313	2
Deletion	Chr3	9742646	9742652	6
Deletion	Chr10	10441024	10441027	3
Deletion	Chr6	11899359	11899361	2
Deletion	Chr1	13462001	13478000	15999	2
Deletion	Chr9	13889670	13889679	9
Deletion	Chr12	14631826	14631845	19
Deletion	Chr6	15070290	15070291	1
Deletion	Chr10	17572792	17572793	1
Deletion	Chr8	23682673	23682681	8
Deletion	Chr2	33420491	33420493	2
Deletion	Chr1	34983701	34983703	2
Deletion	Chr1	43403001	43596000	192999	34

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes