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Mutant Information

Mutant Name	FN3831-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3831-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2437664 T-C Hetero INTRON
SBS Chr1 13325698 C-T Hetero INTERGENIC
SBS Chr1 14809549 A-T Hetero INTERGENIC
SBS Chr1 17623794 G-A Hetero INTERGENIC
SBS Chr1 22257740 A-G Hetero INTERGENIC
SBS Chr1 25653074 G-A Hetero INTERGENIC
SBS Chr1 31234056 C-T Homo UTR_3_PRIME
SBS Chr1 32235671 G-T Homo INTERGENIC
SBS Chr2 12522639 G-A Hetero INTERGENIC
SBS Chr2 14984885 G-A Hetero INTERGENIC
SBS Chr3 685041 G-C Hetero UTR_5_PRIME
SBS Chr3 7952913 G-A Hetero INTRON
SBS Chr3 12495339 C-T Hetero INTERGENIC
SBS Chr3 26243576 T-A Hetero INTERGENIC
SBS Chr3 34078155 C-T Hetero INTERGENIC
SBS Chr3 35805614 T-C Hetero INTERGENIC
SBS Chr4 19140535 C-T Homo INTERGENIC
SBS Chr4 22990854 C-G Homo INTRON
SBS Chr4 31721767 G-A Hetero INTERGENIC
SBS Chr4 34280966 C-T Hetero INTRON
SBS Chr5 6951937 G-A Homo INTERGENIC
SBS Chr5 16755402 C-T Homo INTERGENIC
SBS Chr5 19634841 C-G Hetero INTERGENIC
SBS Chr5 25477433 T-A Hetero INTERGENIC
SBS Chr6 14429528 T-G Hetero INTERGENIC
SBS Chr6 20431898 T-A Hetero UTR_3_PRIME
SBS Chr7 7771913 T-C Homo INTERGENIC
SBS Chr7 13767087 C-T Hetero INTERGENIC
SBS Chr7 22458054 G-A Hetero UTR_3_PRIME
SBS Chr8 5560227 C-T Hetero INTERGENIC
SBS Chr8 19568156 G-A Hetero INTERGENIC
SBS Chr9 1468414 A-G Hetero INTERGENIC
SBS Chr9 6430640 C-T Hetero INTERGENIC
SBS Chr9 7211464 G-A Hetero INTERGENIC
SBS Chr9 7496556 C-T Hetero INTERGENIC
SBS Chr9 12361737 G-A Hetero INTERGENIC
SBS Chr9 12534148 C-T Hetero INTERGENIC
SBS Chr9 22316910 A-T Hetero INTERGENIC
SBS Chr10 2145702 G-A Hetero INTRON
SBS Chr10 22890056 T-A Hetero INTRON
SBS Chr10 23210725 T-A Hetero INTERGENIC
SBS Chr11 13943594 G-A Hetero INTERGENIC
SBS Chr12 1976374 A-C Hetero INTRON
SBS Chr12 2900313 A-G Hetero INTERGENIC
SBS Chr12 11898101 C-G Hetero INTRON
SBS Chr12 17960647 G-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 118050 118051 1
Deletion Chr4 6036586 6036593 7
Deletion Chr1 6085913 6085914 1
Deletion Chr9 11240299 11240514 215
Deletion Chr1 11522282 11522285 3 OsKitaake01g140000
Deletion Chr3 14034001 14141000 106999 10
Deletion Chr2 14205157 14205158 1
Deletion Chr11 26855738 26855741 3
Deletion Chr2 27119393 27119396 3
Deletion Chr2 27527277 27527283 6
Deletion Chr3 31983091 31983093 2
Deletion Chr1 42709290 42709307 17

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23676352 23676358 5
Insertion Chr4 22205697 22205700 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6410046 6927011
Inversion Chr9 6410060 6942121
Inversion Chr9 6674431 7091390
Inversion Chr9 6942118 7091389
Inversion Chr1 24697873 24754236 OsKitaake01g238800
Inversion Chr1 24698052 24754244 OsKitaake01g238800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 19852246 Chr9 13403999
Translocation Chr12 19852970 Chr9 13403997

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2437664	T-C	Hetero	INTRON
SBS	Chr1	13325698	C-T	Hetero	INTERGENIC
SBS	Chr1	14809549	A-T	Hetero	INTERGENIC
SBS	Chr1	17623794	G-A	Hetero	INTERGENIC
SBS	Chr1	22257740	A-G	Hetero	INTERGENIC
SBS	Chr1	25653074	G-A	Hetero	INTERGENIC
SBS	Chr1	31234056	C-T	Homo	UTR_3_PRIME
SBS	Chr1	32235671	G-T	Homo	INTERGENIC
SBS	Chr2	12522639	G-A	Hetero	INTERGENIC
SBS	Chr2	14984885	G-A	Hetero	INTERGENIC
SBS	Chr3	685041	G-C	Hetero	UTR_5_PRIME
SBS	Chr3	7952913	G-A	Hetero	INTRON
SBS	Chr3	12495339	C-T	Hetero	INTERGENIC
SBS	Chr3	26243576	T-A	Hetero	INTERGENIC
SBS	Chr3	34078155	C-T	Hetero	INTERGENIC
SBS	Chr3	35805614	T-C	Hetero	INTERGENIC
SBS	Chr4	19140535	C-T	Homo	INTERGENIC
SBS	Chr4	22990854	C-G	Homo	INTRON
SBS	Chr4	31721767	G-A	Hetero	INTERGENIC
SBS	Chr4	34280966	C-T	Hetero	INTRON
SBS	Chr5	6951937	G-A	Homo	INTERGENIC
SBS	Chr5	16755402	C-T	Homo	INTERGENIC
SBS	Chr5	19634841	C-G	Hetero	INTERGENIC
SBS	Chr5	25477433	T-A	Hetero	INTERGENIC
SBS	Chr6	14429528	T-G	Hetero	INTERGENIC
SBS	Chr6	20431898	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	7771913	T-C	Homo	INTERGENIC
SBS	Chr7	13767087	C-T	Hetero	INTERGENIC
SBS	Chr7	22458054	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	5560227	C-T	Hetero	INTERGENIC
SBS	Chr8	19568156	G-A	Hetero	INTERGENIC
SBS	Chr9	1468414	A-G	Hetero	INTERGENIC
SBS	Chr9	6430640	C-T	Hetero	INTERGENIC
SBS	Chr9	7211464	G-A	Hetero	INTERGENIC
SBS	Chr9	7496556	C-T	Hetero	INTERGENIC
SBS	Chr9	12361737	G-A	Hetero	INTERGENIC
SBS	Chr9	12534148	C-T	Hetero	INTERGENIC
SBS	Chr9	22316910	A-T	Hetero	INTERGENIC
SBS	Chr10	2145702	G-A	Hetero	INTRON
SBS	Chr10	22890056	T-A	Hetero	INTRON
SBS	Chr10	23210725	T-A	Hetero	INTERGENIC
SBS	Chr11	13943594	G-A	Hetero	INTERGENIC
SBS	Chr12	1976374	A-C	Hetero	INTRON
SBS	Chr12	2900313	A-G	Hetero	INTERGENIC
SBS	Chr12	11898101	C-G	Hetero	INTRON
SBS	Chr12	17960647	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	118050	118051	1
Deletion	Chr4	6036586	6036593	7
Deletion	Chr1	6085913	6085914	1
Deletion	Chr9	11240299	11240514	215
Deletion	Chr1	11522282	11522285	3	OsKitaake01g140000
Deletion	Chr3	14034001	14141000	106999	10
Deletion	Chr2	14205157	14205158	1
Deletion	Chr11	26855738	26855741	3
Deletion	Chr2	27119393	27119396	3
Deletion	Chr2	27527277	27527283	6
Deletion	Chr3	31983091	31983093	2
Deletion	Chr1	42709290	42709307	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6410046	6927011
Inversion	Chr9	6410060	6942121
Inversion	Chr9	6674431	7091390
Inversion	Chr9	6942118	7091389
Inversion	Chr1	24697873	24754236	OsKitaake01g238800
Inversion	Chr1	24698052	24754244	OsKitaake01g238800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes