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Mutant Information

Mutant Name	FN3832-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3832-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2054758 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g025800
SBS Chr1 19691108 G-A Hetero INTERGENIC
SBS Chr1 38585785 A-G Homo INTRON
SBS Chr1 41971630 C-A Hetero UTR_5_PRIME
SBS Chr2 2804598 C-A Homo INTERGENIC
SBS Chr2 12293818 T-C Hetero INTERGENIC
SBS Chr2 12332994 G-T Homo INTERGENIC
SBS Chr2 25669188 C-T Hetero INTERGENIC
SBS Chr2 27905132 C-T Homo INTERGENIC
SBS Chr2 27905133 C-T Homo INTERGENIC
SBS Chr2 36144272 A-G Hetero INTERGENIC
SBS Chr3 7297099 A-C Homo INTERGENIC
SBS Chr3 13659546 C-T Hetero INTERGENIC
SBS Chr3 33797661 C-T Hetero INTERGENIC
SBS Chr4 3391120 G-C Homo INTERGENIC
SBS Chr4 3600620 G-A Hetero INTERGENIC
SBS Chr4 7467673 C-A Hetero INTERGENIC
SBS Chr4 11264777 G-T Homo INTERGENIC
SBS Chr4 15293519 G-A Hetero INTERGENIC
SBS Chr4 15350908 G-A Hetero INTERGENIC
SBS Chr4 16824303 A-G Hetero INTERGENIC
SBS Chr4 35972233 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g309000
SBS Chr5 26268433 A-T Hetero INTERGENIC
SBS Chr5 29456853 G-A Hetero INTRON
SBS Chr6 21206346 G-A Homo INTERGENIC
SBS Chr6 27971275 C-T Hetero INTERGENIC
SBS Chr7 5103834 G-A Hetero INTERGENIC
SBS Chr7 5239561 T-A Hetero INTERGENIC
SBS Chr7 20827585 C-T Homo INTERGENIC
SBS Chr7 20882350 G-C Hetero INTERGENIC
SBS Chr7 29184752 G-A Hetero INTERGENIC
SBS Chr8 6702164 C-T Hetero INTERGENIC
SBS Chr8 19213456 C-T Hetero INTERGENIC
SBS Chr8 28311071 T-G Homo UTR_3_PRIME
SBS Chr9 6523970 C-T Homo INTERGENIC
SBS Chr9 7212833 G-C Hetero INTERGENIC
SBS Chr10 6975997 C-G Homo INTERGENIC
SBS Chr10 14225938 C-T Hetero INTERGENIC
SBS Chr10 20558154 G-A Homo INTRON
SBS Chr10 20874542 A-T Homo INTERGENIC
SBS Chr11 12843785 C-T Hetero INTERGENIC
SBS Chr11 23395835 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g186540
SBS Chr11 23743837 A-G Hetero INTERGENIC
SBS Chr11 25251676 C-T Hetero INTERGENIC
SBS Chr12 9234315 A-G Hetero INTERGENIC
SBS Chr12 13848071 A-G Hetero INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3303389 3303398 9
Deletion Chr12 4314085 4314088 3
Deletion Chr7 9570118 9570146 28
Deletion Chr9 10186834 10186835 1
Deletion Chr9 10259158 10259162 4
Deletion Chr9 13408907 13408909 2
Deletion Chr11 13691376 13691378 2
Deletion Chr2 18332282 18332288 6
Deletion Chr11 20470547 20470555 8
Deletion Chr10 20732475 20732476 1 OsKitaake10g159400
Deletion Chr2 33237630 33237637 7
Deletion Chr1 41149232 41149233 1
Deletion Chr1 41468957 41468959 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 44159912 44159919 6 OsKitaake01g493050
Insertion Chr6 4140462 4140465 2
Insertion Chr9 10752371 10752374 2
Insertion Chr5 12633210 12633212 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 28348983 28712373 OsKitaake07g273800
Inversion Chr7 28712377 28906736 OsKitaake07g273800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2054758	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g025800
SBS	Chr1	19691108	G-A	Hetero	INTERGENIC
SBS	Chr1	38585785	A-G	Homo	INTRON
SBS	Chr1	41971630	C-A	Hetero	UTR_5_PRIME
SBS	Chr2	2804598	C-A	Homo	INTERGENIC
SBS	Chr2	12293818	T-C	Hetero	INTERGENIC
SBS	Chr2	12332994	G-T	Homo	INTERGENIC
SBS	Chr2	25669188	C-T	Hetero	INTERGENIC
SBS	Chr2	27905132	C-T	Homo	INTERGENIC
SBS	Chr2	27905133	C-T	Homo	INTERGENIC
SBS	Chr2	36144272	A-G	Hetero	INTERGENIC
SBS	Chr3	7297099	A-C	Homo	INTERGENIC
SBS	Chr3	13659546	C-T	Hetero	INTERGENIC
SBS	Chr3	33797661	C-T	Hetero	INTERGENIC
SBS	Chr4	3391120	G-C	Homo	INTERGENIC
SBS	Chr4	3600620	G-A	Hetero	INTERGENIC
SBS	Chr4	7467673	C-A	Hetero	INTERGENIC
SBS	Chr4	11264777	G-T	Homo	INTERGENIC
SBS	Chr4	15293519	G-A	Hetero	INTERGENIC
SBS	Chr4	15350908	G-A	Hetero	INTERGENIC
SBS	Chr4	16824303	A-G	Hetero	INTERGENIC
SBS	Chr4	35972233	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g309000
SBS	Chr5	26268433	A-T	Hetero	INTERGENIC
SBS	Chr5	29456853	G-A	Hetero	INTRON
SBS	Chr6	21206346	G-A	Homo	INTERGENIC
SBS	Chr6	27971275	C-T	Hetero	INTERGENIC
SBS	Chr7	5103834	G-A	Hetero	INTERGENIC
SBS	Chr7	5239561	T-A	Hetero	INTERGENIC
SBS	Chr7	20827585	C-T	Homo	INTERGENIC
SBS	Chr7	20882350	G-C	Hetero	INTERGENIC
SBS	Chr7	29184752	G-A	Hetero	INTERGENIC
SBS	Chr8	6702164	C-T	Hetero	INTERGENIC
SBS	Chr8	19213456	C-T	Hetero	INTERGENIC
SBS	Chr8	28311071	T-G	Homo	UTR_3_PRIME
SBS	Chr9	6523970	C-T	Homo	INTERGENIC
SBS	Chr9	7212833	G-C	Hetero	INTERGENIC
SBS	Chr10	6975997	C-G	Homo	INTERGENIC
SBS	Chr10	14225938	C-T	Hetero	INTERGENIC
SBS	Chr10	20558154	G-A	Homo	INTRON
SBS	Chr10	20874542	A-T	Homo	INTERGENIC
SBS	Chr11	12843785	C-T	Hetero	INTERGENIC
SBS	Chr11	23395835	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g186540
SBS	Chr11	23743837	A-G	Hetero	INTERGENIC
SBS	Chr11	25251676	C-T	Hetero	INTERGENIC
SBS	Chr12	9234315	A-G	Hetero	INTERGENIC
SBS	Chr12	13848071	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3303389	3303398	9
Deletion	Chr12	4314085	4314088	3
Deletion	Chr7	9570118	9570146	28
Deletion	Chr9	10186834	10186835	1
Deletion	Chr9	10259158	10259162	4
Deletion	Chr9	13408907	13408909	2
Deletion	Chr11	13691376	13691378	2
Deletion	Chr2	18332282	18332288	6
Deletion	Chr11	20470547	20470555	8
Deletion	Chr10	20732475	20732476	1	OsKitaake10g159400
Deletion	Chr2	33237630	33237637	7
Deletion	Chr1	41149232	41149233	1
Deletion	Chr1	41468957	41468959	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	28348983	28712373	OsKitaake07g273800
Inversion	Chr7	28712377	28906736	OsKitaake07g273800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes