Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3833-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3833-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13043823 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 15043470 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 35031615 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 5860530 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 13464676 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 15525261 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 14301478 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14853655 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18662310 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 23877762 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 33171184 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 31700965 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1958514 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 3407491 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 8485985 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 15119818 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 21391282 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 13159214 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 20232442 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 24564591 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7355599 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 20554968 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21140593 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1083859 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 1981556 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23228218 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 10238831 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13960791 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25453037 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g205100 |
| SBS | Chr12 | 11171951 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 12625952 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15875055 | G-T | Homo | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 3941781 | 3941782 | 1 | |
| Deletion | Chr5 | 4571831 | 4571832 | 1 | |
| Deletion | Chr9 | 5626407 | 5626422 | 15 | |
| Deletion | Chr2 | 6275001 | 6285000 | 9999 | 2 |
| Deletion | Chr5 | 7120900 | 7120903 | 3 | |
| Deletion | Chr2 | 7337924 | 7337926 | 2 | |
| Deletion | Chr2 | 10155284 | 10155285 | 1 | OsKitaake02g121901 |
| Deletion | Chr1 | 10198918 | 10198926 | 8 | |
| Deletion | Chr7 | 13482001 | 13669000 | 186999 | 6 |
| Deletion | Chr7 | 13699001 | 13727000 | 27999 | |
| Deletion | Chr7 | 13742001 | 13824000 | 81999 | 4 |
| Deletion | Chr3 | 14063067 | 14063073 | 6 | OsKitaake03g183950 |
| Deletion | Chr7 | 14340001 | 14595000 | 254999 | 3 |
| Deletion | Chr3 | 15720742 | 15720750 | 8 | |
| Deletion | Chr12 | 16545682 | 16545685 | 3 | |
| Deletion | Chr3 | 19170497 | 19170500 | 3 | |
| Deletion | Chr4 | 27227145 | 27227150 | 5 | |
| Deletion | Chr4 | 29951775 | 29951778 | 3 | |
| Deletion | Chr2 | 34321489 | 34321501 | 12 | OsKitaake02g356700 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 97031 | 97034 | 2 | |
| Insertion | Chr2 | 9520563 | 9520566 | 2 | |
| Insertion | Chr3 | 23180574 | 23180578 | 3 | |
| Insertion | Chr5 | 21867251 | 21867254 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 4112854 | 4440290 | 2 |
| Inversion | Chr3 | 4112863 | 4440294 | 2 |