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Mutant Information

Mutant Name	FN3834-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3834-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 62

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7281465 T-A Homo INTERGENIC
SBS Chr1 7836327 G-A Homo INTERGENIC
SBS Chr1 13288020 G-A Hetero INTERGENIC
SBS Chr1 20107161 G-A Hetero INTERGENIC
SBS Chr1 20675625 C-T Hetero UTR_3_PRIME
SBS Chr1 28212448 C-T Hetero INTERGENIC
SBS Chr1 32296423 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g326000
SBS Chr1 36338307 A-G Hetero INTERGENIC
SBS Chr1 40853907 G-A Hetero INTRON
SBS Chr2 18421635 G-A Hetero INTERGENIC
SBS Chr2 33994056 C-T Hetero INTERGENIC
SBS Chr2 34093073 C-T Hetero INTRON
SBS Chr3 2603064 T-C Hetero INTRON
SBS Chr3 10911327 G-T Hetero INTERGENIC
SBS Chr3 15807026 A-T Hetero INTERGENIC
SBS Chr3 15807030 C-A Hetero INTERGENIC
SBS Chr3 24379601 G-A Hetero INTERGENIC
SBS Chr3 27938993 A-G Hetero INTERGENIC
SBS Chr3 27938995 C-T Hetero INTERGENIC
SBS Chr4 3596472 C-T Hetero INTERGENIC
SBS Chr4 14830505 C-T Hetero INTERGENIC
SBS Chr4 17767900 C-T Hetero INTERGENIC
SBS Chr4 18165300 T-G Homo INTERGENIC
SBS Chr4 18257809 A-G Homo INTERGENIC
SBS Chr4 24186855 A-T Hetero INTRON
SBS Chr4 25204021 T-C Hetero INTERGENIC
SBS Chr4 34763220 C-T Hetero INTERGENIC
SBS Chr5 6212339 G-T Hetero INTERGENIC
SBS Chr5 6212341 G-T Hetero INTERGENIC
SBS Chr5 12885988 A-G Homo INTERGENIC
SBS Chr5 18561665 A-G Hetero INTERGENIC
SBS Chr5 20265884 C-T Hetero INTERGENIC
SBS Chr5 28002015 A-G Homo INTRON
SBS Chr6 2464936 C-T Hetero STOP_GAINED OsKitaake06g032700
SBS Chr6 4892492 T-C Hetero INTERGENIC
SBS Chr6 16565062 A-T Homo INTERGENIC
SBS Chr7 3081409 C-T Homo INTERGENIC
SBS Chr7 9672145 G-C Homo INTERGENIC
SBS Chr8 354763 T-A Homo UTR_3_PRIME
SBS Chr8 11276567 T-C Hetero INTERGENIC
SBS Chr8 23099160 G-A Hetero INTERGENIC
SBS Chr9 2277229 G-A Hetero INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 8068159 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g045400
SBS Chr9 9392578 T-G Homo INTERGENIC
SBS Chr9 12313292 G-A Homo INTERGENIC
SBS Chr9 16116497 G-C Hetero SYNONYMOUS_CODING
SBS Chr9 21656269 T-C Hetero INTERGENIC
SBS Chr10 10066762 G-A Hetero INTERGENIC
SBS Chr10 20793392 C-T Hetero INTERGENIC
SBS Chr11 5535003 A-T Homo INTERGENIC
SBS Chr11 9550551 C-T Hetero INTERGENIC
SBS Chr11 11998152 C-T Homo INTERGENIC
SBS Chr11 15372384 T-A Homo INTERGENIC
SBS Chr11 18946715 T-G Homo INTERGENIC
SBS Chr11 20353840 C-T Homo START_GAINED
SBS Chr11 24337151 C-A Hetero INTERGENIC
SBS Chr11 25756767 G-T Hetero INTERGENIC
SBS Chr12 8377964 C-A Hetero INTERGENIC
SBS Chr12 9860332 G-T Homo INTERGENIC
SBS Chr12 13710324 A-G Homo INTERGENIC
SBS Chr12 21601924 G-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4101003 4101008 5
Deletion Chr1 4880916 4881264 348
Deletion Chr12 5632280 5632301 21
Deletion Chr11 11933172 11933174 2
Deletion Chr3 13396128 13396136 8
Deletion Chr5 19790001 19810000 19999 3
Deletion Chr9 20148110 20148115 5 OsKitaake09g169050
Deletion Chr7 20970993 20970995 2
Deletion Chr11 21661788 21661793 5
Deletion Chr1 21765199 21765201 2
Deletion Chr12 22080259 22080271 12
Deletion Chr5 22746714 22746732 18 OsKitaake05g187400
Deletion Chr10 23908001 23929000 20999 5
Deletion Chr7 24337835 24337836 1 OsKitaake07g216500
Deletion Chr11 28886147 28886153 6
Deletion Chr2 32109001 32153000 43999 7
Deletion Chr2 32818001 33030000 211999 36

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6785620 6785626 5
Insertion Chr7 21907580 21907583 2
Insertion Chr9 15121259 15121262 2
Insertion Chr11 4266404 4266409 4

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 24043736 24146248
Inversion Chr2 32108545 32304382
Inversion Chr2 32153839 32304384 OsKitaake02g328600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 3079305 Chr6 18620374
Translocation Chr7 3079310 Chr6 18620542
Translocation Chr6 18620542 Chr2 33039674

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7281465	T-A	Homo	INTERGENIC
SBS	Chr1	7836327	G-A	Homo	INTERGENIC
SBS	Chr1	13288020	G-A	Hetero	INTERGENIC
SBS	Chr1	20107161	G-A	Hetero	INTERGENIC
SBS	Chr1	20675625	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	28212448	C-T	Hetero	INTERGENIC
SBS	Chr1	32296423	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g326000
SBS	Chr1	36338307	A-G	Hetero	INTERGENIC
SBS	Chr1	40853907	G-A	Hetero	INTRON
SBS	Chr2	18421635	G-A	Hetero	INTERGENIC
SBS	Chr2	33994056	C-T	Hetero	INTERGENIC
SBS	Chr2	34093073	C-T	Hetero	INTRON
SBS	Chr3	2603064	T-C	Hetero	INTRON
SBS	Chr3	10911327	G-T	Hetero	INTERGENIC
SBS	Chr3	15807026	A-T	Hetero	INTERGENIC
SBS	Chr3	15807030	C-A	Hetero	INTERGENIC
SBS	Chr3	24379601	G-A	Hetero	INTERGENIC
SBS	Chr3	27938993	A-G	Hetero	INTERGENIC
SBS	Chr3	27938995	C-T	Hetero	INTERGENIC
SBS	Chr4	3596472	C-T	Hetero	INTERGENIC
SBS	Chr4	14830505	C-T	Hetero	INTERGENIC
SBS	Chr4	17767900	C-T	Hetero	INTERGENIC
SBS	Chr4	18165300	T-G	Homo	INTERGENIC
SBS	Chr4	18257809	A-G	Homo	INTERGENIC
SBS	Chr4	24186855	A-T	Hetero	INTRON
SBS	Chr4	25204021	T-C	Hetero	INTERGENIC
SBS	Chr4	34763220	C-T	Hetero	INTERGENIC
SBS	Chr5	6212339	G-T	Hetero	INTERGENIC
SBS	Chr5	6212341	G-T	Hetero	INTERGENIC
SBS	Chr5	12885988	A-G	Homo	INTERGENIC
SBS	Chr5	18561665	A-G	Hetero	INTERGENIC
SBS	Chr5	20265884	C-T	Hetero	INTERGENIC
SBS	Chr5	28002015	A-G	Homo	INTRON
SBS	Chr6	2464936	C-T	Hetero	STOP_GAINED	OsKitaake06g032700
SBS	Chr6	4892492	T-C	Hetero	INTERGENIC
SBS	Chr6	16565062	A-T	Homo	INTERGENIC
SBS	Chr7	3081409	C-T	Homo	INTERGENIC
SBS	Chr7	9672145	G-C	Homo	INTERGENIC
SBS	Chr8	354763	T-A	Homo	UTR_3_PRIME
SBS	Chr8	11276567	T-C	Hetero	INTERGENIC
SBS	Chr8	23099160	G-A	Hetero	INTERGENIC
SBS	Chr9	2277229	G-A	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	8068159	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g045400
SBS	Chr9	9392578	T-G	Homo	INTERGENIC
SBS	Chr9	12313292	G-A	Homo	INTERGENIC
SBS	Chr9	16116497	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	21656269	T-C	Hetero	INTERGENIC
SBS	Chr10	10066762	G-A	Hetero	INTERGENIC
SBS	Chr10	20793392	C-T	Hetero	INTERGENIC
SBS	Chr11	5535003	A-T	Homo	INTERGENIC
SBS	Chr11	9550551	C-T	Hetero	INTERGENIC
SBS	Chr11	11998152	C-T	Homo	INTERGENIC
SBS	Chr11	15372384	T-A	Homo	INTERGENIC
SBS	Chr11	18946715	T-G	Homo	INTERGENIC
SBS	Chr11	20353840	C-T	Homo	START_GAINED
SBS	Chr11	24337151	C-A	Hetero	INTERGENIC
SBS	Chr11	25756767	G-T	Hetero	INTERGENIC
SBS	Chr12	8377964	C-A	Hetero	INTERGENIC
SBS	Chr12	9860332	G-T	Homo	INTERGENIC
SBS	Chr12	13710324	A-G	Homo	INTERGENIC
SBS	Chr12	21601924	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4101003	4101008	5
Deletion	Chr1	4880916	4881264	348
Deletion	Chr12	5632280	5632301	21
Deletion	Chr11	11933172	11933174	2
Deletion	Chr3	13396128	13396136	8
Deletion	Chr5	19790001	19810000	19999	3
Deletion	Chr9	20148110	20148115	5	OsKitaake09g169050
Deletion	Chr7	20970993	20970995	2
Deletion	Chr11	21661788	21661793	5
Deletion	Chr1	21765199	21765201	2
Deletion	Chr12	22080259	22080271	12
Deletion	Chr5	22746714	22746732	18	OsKitaake05g187400
Deletion	Chr10	23908001	23929000	20999	5
Deletion	Chr7	24337835	24337836	1	OsKitaake07g216500
Deletion	Chr11	28886147	28886153	6
Deletion	Chr2	32109001	32153000	43999	7
Deletion	Chr2	32818001	33030000	211999	36

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	24043736	24146248
Inversion	Chr2	32108545	32304382
Inversion	Chr2	32153839	32304384	OsKitaake02g328600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes