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Mutant Information

Mutant Name	FN3835-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3835-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4424826 A-T Hetero INTRON
SBS Chr1 9129831 A-T Hetero INTERGENIC
SBS Chr1 19010268 A-G Hetero INTERGENIC
SBS Chr1 22061308 C-T Hetero INTERGENIC
SBS Chr1 22853960 G-A Homo INTERGENIC
SBS Chr1 40067816 G-A Hetero INTRON
SBS Chr2 3418134 C-A Hetero UTR_3_PRIME
SBS Chr3 30608149 T-C Hetero INTERGENIC
SBS Chr3 32125277 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g340500
SBS Chr4 853040 G-A Homo INTERGENIC
SBS Chr4 2240158 C-T Homo INTERGENIC
SBS Chr4 34361859 T-A Homo INTERGENIC
SBS Chr5 4621007 C-A Hetero INTERGENIC
SBS Chr5 8151350 T-A Homo INTERGENIC
SBS Chr5 8151351 G-T Homo INTERGENIC
SBS Chr5 8151352 C-A Homo INTERGENIC
SBS Chr8 12411181 G-C Hetero INTRON
SBS Chr8 12411184 A-T Hetero INTRON
SBS Chr8 23611935 G-A Hetero INTERGENIC
SBS Chr8 29039675 T-C Hetero INTERGENIC
SBS Chr11 4042484 C-T Hetero INTRON
SBS Chr11 18490705 G-A Hetero INTERGENIC
SBS Chr12 252241 C-T Hetero INTERGENIC
SBS Chr12 10142771 G-A Hetero INTERGENIC
SBS Chr12 12628955 A-C Hetero INTERGENIC
SBS Chr12 25982636 C-T Hetero INTRON

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1812883 1812885 2
Deletion Chr5 8151563 8151576 13
Deletion Chr1 11808001 12191000 382999 28
Deletion Chr5 15605874 15605880 6
Deletion Chr4 17097001 17196000 98999 10
Deletion Chr7 17803610 17803684 74
Deletion Chr11 20728941 20728944 3
Deletion Chr8 21384001 21423000 38999 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 17096758 17221284 OsKitaake04g083400
Inversion Chr4 17195060 17221336 OsKitaake04g084101

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4424826	A-T	Hetero	INTRON
SBS	Chr1	9129831	A-T	Hetero	INTERGENIC
SBS	Chr1	19010268	A-G	Hetero	INTERGENIC
SBS	Chr1	22061308	C-T	Hetero	INTERGENIC
SBS	Chr1	22853960	G-A	Homo	INTERGENIC
SBS	Chr1	40067816	G-A	Hetero	INTRON
SBS	Chr2	3418134	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	30608149	T-C	Hetero	INTERGENIC
SBS	Chr3	32125277	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g340500
SBS	Chr4	853040	G-A	Homo	INTERGENIC
SBS	Chr4	2240158	C-T	Homo	INTERGENIC
SBS	Chr4	34361859	T-A	Homo	INTERGENIC
SBS	Chr5	4621007	C-A	Hetero	INTERGENIC
SBS	Chr5	8151350	T-A	Homo	INTERGENIC
SBS	Chr5	8151351	G-T	Homo	INTERGENIC
SBS	Chr5	8151352	C-A	Homo	INTERGENIC
SBS	Chr8	12411181	G-C	Hetero	INTRON
SBS	Chr8	12411184	A-T	Hetero	INTRON
SBS	Chr8	23611935	G-A	Hetero	INTERGENIC
SBS	Chr8	29039675	T-C	Hetero	INTERGENIC
SBS	Chr11	4042484	C-T	Hetero	INTRON
SBS	Chr11	18490705	G-A	Hetero	INTERGENIC
SBS	Chr12	252241	C-T	Hetero	INTERGENIC
SBS	Chr12	10142771	G-A	Hetero	INTERGENIC
SBS	Chr12	12628955	A-C	Hetero	INTERGENIC
SBS	Chr12	25982636	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1812883	1812885	2
Deletion	Chr5	8151563	8151576	13
Deletion	Chr1	11808001	12191000	382999	28
Deletion	Chr5	15605874	15605880	6
Deletion	Chr4	17097001	17196000	98999	10
Deletion	Chr7	17803610	17803684	74
Deletion	Chr11	20728941	20728944	3
Deletion	Chr8	21384001	21423000	38999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	17096758	17221284	OsKitaake04g083400
Inversion	Chr4	17195060	17221336	OsKitaake04g084101

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes