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Mutant Information

Mutant Name	FN3836-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3836-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15038673 A-C Homo NON_SYNONYMOUS_CODING OsKitaake01g142800
SBS Chr1 19332319 T-A Homo INTRON
SBS Chr2 14249993 C-A Hetero INTERGENIC
SBS Chr2 17201877 G-A Hetero INTERGENIC
SBS Chr4 16960053 C-T Homo INTERGENIC
SBS Chr4 16960054 C-T Homo INTERGENIC
SBS Chr5 13202179 T-G Hetero INTERGENIC
SBS Chr6 6685312 T-A Hetero INTERGENIC
SBS Chr7 12231780 T-C Hetero INTERGENIC
SBS Chr7 21007193 C-A Hetero INTERGENIC
SBS Chr7 28222248 A-G Hetero INTERGENIC
SBS Chr8 3458891 T-C Hetero INTRON
SBS Chr8 4246669 C-T Hetero INTRON
SBS Chr9 6418261 G-A Hetero INTERGENIC
SBS Chr9 10245055 C-T Hetero INTERGENIC
SBS Chr9 19711129 G-A Homo UTR_3_PRIME
SBS Chr9 21773929 T-A Homo INTERGENIC
SBS Chr11 16380365 A-G Hetero INTRON
SBS Chr11 16589832 G-A Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 7484 7835 351
Deletion Chr5 4257849 4257856 7
Deletion Chr4 10612665 10612673 8
Deletion Chr2 10762622 10762628 6
Deletion Chr1 19093428 19093438 10

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 11306592 Chr3 6464974 OsKitaake03g092100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15038673	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g142800
SBS	Chr1	19332319	T-A	Homo	INTRON
SBS	Chr2	14249993	C-A	Hetero	INTERGENIC
SBS	Chr2	17201877	G-A	Hetero	INTERGENIC
SBS	Chr4	16960053	C-T	Homo	INTERGENIC
SBS	Chr4	16960054	C-T	Homo	INTERGENIC
SBS	Chr5	13202179	T-G	Hetero	INTERGENIC
SBS	Chr6	6685312	T-A	Hetero	INTERGENIC
SBS	Chr7	12231780	T-C	Hetero	INTERGENIC
SBS	Chr7	21007193	C-A	Hetero	INTERGENIC
SBS	Chr7	28222248	A-G	Hetero	INTERGENIC
SBS	Chr8	3458891	T-C	Hetero	INTRON
SBS	Chr8	4246669	C-T	Hetero	INTRON
SBS	Chr9	6418261	G-A	Hetero	INTERGENIC
SBS	Chr9	10245055	C-T	Hetero	INTERGENIC
SBS	Chr9	19711129	G-A	Homo	UTR_3_PRIME
SBS	Chr9	21773929	T-A	Homo	INTERGENIC
SBS	Chr11	16380365	A-G	Hetero	INTRON
SBS	Chr11	16589832	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7484	7835	351
Deletion	Chr5	4257849	4257856	7
Deletion	Chr4	10612665	10612673	8
Deletion	Chr2	10762622	10762628	6
Deletion	Chr1	19093428	19093438	10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	11306592	Chr3	6464974	OsKitaake03g092100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes