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Mutant Information

Mutant Name	FN3837-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3837-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11063920 T-C Hetero INTERGENIC
SBS Chr1 13472882 T-C Hetero UTR_5_PRIME
SBS Chr1 14282130 G-A Hetero INTERGENIC
SBS Chr1 24406206 T-C Hetero INTERGENIC
SBS Chr1 31457927 G-A Homo INTERGENIC
SBS Chr1 36681590 A-T Homo INTERGENIC
SBS Chr2 13705763 G-A Hetero INTERGENIC
SBS Chr3 3129011 T-A Homo INTERGENIC
SBS Chr3 12203758 A-T Hetero INTERGENIC
SBS Chr3 12203759 G-T Hetero INTERGENIC
SBS Chr3 24633104 C-T Homo INTERGENIC
SBS Chr3 25683541 T-A Hetero INTERGENIC
SBS Chr3 29129313 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g302700
SBS Chr4 20796488 C-T Hetero INTERGENIC
SBS Chr5 1895213 C-T Hetero INTERGENIC
SBS Chr5 4284686 T-G Hetero INTERGENIC
SBS Chr5 14093673 A-G Hetero INTERGENIC
SBS Chr5 16399623 G-C Hetero INTERGENIC
SBS Chr5 18036057 A-G Hetero INTERGENIC
SBS Chr5 26475285 A-T Hetero INTRON
SBS Chr6 12932467 C-G Hetero INTRON
SBS Chr6 17483032 G-C Hetero INTERGENIC
SBS Chr6 18377551 C-T Hetero INTRON
SBS Chr6 18377552 A-T Hetero INTRON
SBS Chr6 26752585 A-G Hetero INTERGENIC
SBS Chr7 3469239 C-T Homo INTERGENIC
SBS Chr7 6224595 C-T Homo UTR_5_PRIME
SBS Chr7 6224596 A-T Homo UTR_5_PRIME
SBS Chr7 9123222 A-G Homo INTERGENIC
SBS Chr9 21116576 C-T Hetero INTERGENIC
SBS Chr10 9868409 C-T Hetero INTERGENIC
SBS Chr11 3424808 T-C Homo INTERGENIC
SBS Chr11 4501518 C-T Homo INTERGENIC
SBS Chr11 12802488 G-A Hetero INTERGENIC
SBS Chr11 13344657 C-A Homo INTERGENIC
SBS Chr12 3020683 C-T Hetero INTRON
SBS Chr12 3020689 T-A Hetero INTRON
SBS Chr12 11039594 G-A Homo INTERGENIC
SBS Chr12 17199789 G-A Hetero INTERGENIC
SBS Chr12 21650919 C-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1915001 1926000 10999
Deletion Chr8 8864255 8864257 2
Deletion Chr7 9217017 9217028 11
Deletion Chr1 20471971 20471986 15
Deletion Chr8 21880844 21880845 1 OsKitaake08g165400
Deletion Chr6 22824860 22824862 2
Deletion Chr6 26720001 26731000 10999 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22816492 22816495 2
Insertion Chr7 29513677 29513680 2
Insertion Chr11 7519534 7519537 2
Insertion Chr11 16338087 16338090 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 18645963 18746353
Inversion Chr8 18646025 18746374
Inversion Chr5 24030449 24079650 OsKitaake05g212500
Inversion Chr5 24030459 24079652

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1915381 Chr5 26253793
Translocation Chr9 4610453 Chr1 5370167
Translocation Chr9 4613126 Chr1 5370154
Translocation Chr7 28689227 Chr6 13522629

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11063920	T-C	Hetero	INTERGENIC
SBS	Chr1	13472882	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	14282130	G-A	Hetero	INTERGENIC
SBS	Chr1	24406206	T-C	Hetero	INTERGENIC
SBS	Chr1	31457927	G-A	Homo	INTERGENIC
SBS	Chr1	36681590	A-T	Homo	INTERGENIC
SBS	Chr2	13705763	G-A	Hetero	INTERGENIC
SBS	Chr3	3129011	T-A	Homo	INTERGENIC
SBS	Chr3	12203758	A-T	Hetero	INTERGENIC
SBS	Chr3	12203759	G-T	Hetero	INTERGENIC
SBS	Chr3	24633104	C-T	Homo	INTERGENIC
SBS	Chr3	25683541	T-A	Hetero	INTERGENIC
SBS	Chr3	29129313	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g302700
SBS	Chr4	20796488	C-T	Hetero	INTERGENIC
SBS	Chr5	1895213	C-T	Hetero	INTERGENIC
SBS	Chr5	4284686	T-G	Hetero	INTERGENIC
SBS	Chr5	14093673	A-G	Hetero	INTERGENIC
SBS	Chr5	16399623	G-C	Hetero	INTERGENIC
SBS	Chr5	18036057	A-G	Hetero	INTERGENIC
SBS	Chr5	26475285	A-T	Hetero	INTRON
SBS	Chr6	12932467	C-G	Hetero	INTRON
SBS	Chr6	17483032	G-C	Hetero	INTERGENIC
SBS	Chr6	18377551	C-T	Hetero	INTRON
SBS	Chr6	18377552	A-T	Hetero	INTRON
SBS	Chr6	26752585	A-G	Hetero	INTERGENIC
SBS	Chr7	3469239	C-T	Homo	INTERGENIC
SBS	Chr7	6224595	C-T	Homo	UTR_5_PRIME
SBS	Chr7	6224596	A-T	Homo	UTR_5_PRIME
SBS	Chr7	9123222	A-G	Homo	INTERGENIC
SBS	Chr9	21116576	C-T	Hetero	INTERGENIC
SBS	Chr10	9868409	C-T	Hetero	INTERGENIC
SBS	Chr11	3424808	T-C	Homo	INTERGENIC
SBS	Chr11	4501518	C-T	Homo	INTERGENIC
SBS	Chr11	12802488	G-A	Hetero	INTERGENIC
SBS	Chr11	13344657	C-A	Homo	INTERGENIC
SBS	Chr12	3020683	C-T	Hetero	INTRON
SBS	Chr12	3020689	T-A	Hetero	INTRON
SBS	Chr12	11039594	G-A	Homo	INTERGENIC
SBS	Chr12	17199789	G-A	Hetero	INTERGENIC
SBS	Chr12	21650919	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1915001	1926000	10999
Deletion	Chr8	8864255	8864257	2
Deletion	Chr7	9217017	9217028	11
Deletion	Chr1	20471971	20471986	15
Deletion	Chr8	21880844	21880845	1	OsKitaake08g165400
Deletion	Chr6	22824860	22824862	2
Deletion	Chr6	26720001	26731000	10999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	18645963	18746353
Inversion	Chr8	18646025	18746374
Inversion	Chr5	24030449	24079650	OsKitaake05g212500
Inversion	Chr5	24030459	24079652

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes