Search Kitaake

Mutant Information

Mutant Name	FN3838-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3838-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2435634 G-A Homo INTERGENIC
SBS Chr1 24715950 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g238500
SBS Chr1 40770609 C-A Hetero UTR_5_PRIME
SBS Chr1 41936519 C-T Hetero INTERGENIC
SBS Chr1 43856828 T-A Hetero INTRON
SBS Chr2 4872393 A-G Hetero UTR_3_PRIME
SBS Chr2 8289758 C-A Hetero INTERGENIC
SBS Chr2 12852163 T-A Hetero INTRON
SBS Chr2 12852173 T-C Hetero INTRON
SBS Chr2 17448507 C-A Homo INTRON
SBS Chr2 35408248 G-A Hetero INTERGENIC
SBS Chr3 2663320 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 10259136 C-G Hetero INTERGENIC
SBS Chr3 11833422 C-A Hetero INTERGENIC
SBS Chr3 19518191 A-G Hetero INTERGENIC
SBS Chr3 20634016 T-A Hetero INTERGENIC
SBS Chr4 23008500 T-G Hetero INTERGENIC
SBS Chr4 26734266 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g193100
SBS Chr4 34023668 G-A Hetero INTERGENIC
SBS Chr5 5356177 G-T Hetero INTERGENIC
SBS Chr5 12674589 T-A Hetero INTERGENIC
SBS Chr5 14049763 T-A Hetero INTERGENIC
SBS Chr5 18965504 C-A Hetero INTERGENIC
SBS Chr5 24988936 T-G Hetero INTERGENIC
SBS Chr6 6472697 G-C Hetero INTERGENIC
SBS Chr6 8960471 A-G Hetero INTRON
SBS Chr6 31015601 C-T Homo INTRON
SBS Chr7 1474693 G-C Homo UTR_3_PRIME
SBS Chr7 5850075 T-C Hetero INTERGENIC
SBS Chr7 9730114 C-T Hetero INTERGENIC
SBS Chr7 11580798 C-A Homo INTERGENIC
SBS Chr7 14142394 A-G Homo NON_SYNONYMOUS_CODING OsKitaake07g122200
SBS Chr7 18930877 C-A Hetero INTERGENIC
SBS Chr7 22627979 G-A Homo UTR_3_PRIME
SBS Chr8 5829905 C-A Hetero INTERGENIC
SBS Chr8 14232715 G-A Hetero INTERGENIC
SBS Chr8 14577230 T-A Hetero INTERGENIC
SBS Chr8 23828698 G-A Homo INTERGENIC
SBS Chr8 28206304 G-C Hetero INTRON
SBS Chr9 1822805 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g010100
SBS Chr9 4601835 C-T Homo INTERGENIC
SBS Chr9 4601836 C-G Homo INTERGENIC
SBS Chr9 5586250 T-C Hetero INTRON
SBS Chr9 13166777 C-A Hetero INTERGENIC
SBS Chr9 15896086 T-A Hetero INTRON
SBS Chr9 19692583 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g161600
SBS Chr10 1726567 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g012200
SBS Chr10 6596419 C-G Hetero INTERGENIC
SBS Chr11 3163111 G-T Hetero INTERGENIC
SBS Chr11 15374632 G-A Hetero INTERGENIC
SBS Chr11 24627264 C-G Homo INTRON
SBS Chr12 405150 G-C Hetero INTERGENIC
SBS Chr12 4725650 T-C Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 255745 255750 5 OsKitaake05g003300
Deletion Chr12 3574787 3574788 1
Deletion Chr11 3968810 3968811 1
Deletion Chr4 4498658 4498664 6
Deletion Chr7 7119957 7119959 2
Deletion Chr3 12435001 12607000 171999 25
Deletion Chr3 15167204 15167209 5
Deletion Chr1 17108049 17108050 1
Deletion Chr7 18795058 18795060 2
Deletion Chr6 22788369 22788370 1
Deletion Chr8 24306553 24306561 8
Deletion Chr1 27282562 27282569 7
Deletion Chr1 27936138 27936143 5
Deletion Chr3 28733881 28733888 7
Deletion Chr6 29451560 29451561 1
Deletion Chr1 32581453 32581459 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 298310 298317 6
Insertion Chr4 9496147 9496149 1
Insertion Chr4 24151137 24151139 1 OsKitaake04g154900

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6279849 6316202 OsKitaake02g084900
Inversion Chr2 6279854 6316236 OsKitaake02g084900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2435634	G-A	Homo	INTERGENIC
SBS	Chr1	24715950	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g238500
SBS	Chr1	40770609	C-A	Hetero	UTR_5_PRIME
SBS	Chr1	41936519	C-T	Hetero	INTERGENIC
SBS	Chr1	43856828	T-A	Hetero	INTRON
SBS	Chr2	4872393	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	8289758	C-A	Hetero	INTERGENIC
SBS	Chr2	12852163	T-A	Hetero	INTRON
SBS	Chr2	12852173	T-C	Hetero	INTRON
SBS	Chr2	17448507	C-A	Homo	INTRON
SBS	Chr2	35408248	G-A	Hetero	INTERGENIC
SBS	Chr3	2663320	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	10259136	C-G	Hetero	INTERGENIC
SBS	Chr3	11833422	C-A	Hetero	INTERGENIC
SBS	Chr3	19518191	A-G	Hetero	INTERGENIC
SBS	Chr3	20634016	T-A	Hetero	INTERGENIC
SBS	Chr4	23008500	T-G	Hetero	INTERGENIC
SBS	Chr4	26734266	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g193100
SBS	Chr4	34023668	G-A	Hetero	INTERGENIC
SBS	Chr5	5356177	G-T	Hetero	INTERGENIC
SBS	Chr5	12674589	T-A	Hetero	INTERGENIC
SBS	Chr5	14049763	T-A	Hetero	INTERGENIC
SBS	Chr5	18965504	C-A	Hetero	INTERGENIC
SBS	Chr5	24988936	T-G	Hetero	INTERGENIC
SBS	Chr6	6472697	G-C	Hetero	INTERGENIC
SBS	Chr6	8960471	A-G	Hetero	INTRON
SBS	Chr6	31015601	C-T	Homo	INTRON
SBS	Chr7	1474693	G-C	Homo	UTR_3_PRIME
SBS	Chr7	5850075	T-C	Hetero	INTERGENIC
SBS	Chr7	9730114	C-T	Hetero	INTERGENIC
SBS	Chr7	11580798	C-A	Homo	INTERGENIC
SBS	Chr7	14142394	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g122200
SBS	Chr7	18930877	C-A	Hetero	INTERGENIC
SBS	Chr7	22627979	G-A	Homo	UTR_3_PRIME
SBS	Chr8	5829905	C-A	Hetero	INTERGENIC
SBS	Chr8	14232715	G-A	Hetero	INTERGENIC
SBS	Chr8	14577230	T-A	Hetero	INTERGENIC
SBS	Chr8	23828698	G-A	Homo	INTERGENIC
SBS	Chr8	28206304	G-C	Hetero	INTRON
SBS	Chr9	1822805	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g010100
SBS	Chr9	4601835	C-T	Homo	INTERGENIC
SBS	Chr9	4601836	C-G	Homo	INTERGENIC
SBS	Chr9	5586250	T-C	Hetero	INTRON
SBS	Chr9	13166777	C-A	Hetero	INTERGENIC
SBS	Chr9	15896086	T-A	Hetero	INTRON
SBS	Chr9	19692583	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g161600
SBS	Chr10	1726567	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g012200
SBS	Chr10	6596419	C-G	Hetero	INTERGENIC
SBS	Chr11	3163111	G-T	Hetero	INTERGENIC
SBS	Chr11	15374632	G-A	Hetero	INTERGENIC
SBS	Chr11	24627264	C-G	Homo	INTRON
SBS	Chr12	405150	G-C	Hetero	INTERGENIC
SBS	Chr12	4725650	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	255745	255750	5	OsKitaake05g003300
Deletion	Chr12	3574787	3574788	1
Deletion	Chr11	3968810	3968811	1
Deletion	Chr4	4498658	4498664	6
Deletion	Chr7	7119957	7119959	2
Deletion	Chr3	12435001	12607000	171999	25
Deletion	Chr3	15167204	15167209	5
Deletion	Chr1	17108049	17108050	1
Deletion	Chr7	18795058	18795060	2
Deletion	Chr6	22788369	22788370	1
Deletion	Chr8	24306553	24306561	8
Deletion	Chr1	27282562	27282569	7
Deletion	Chr1	27936138	27936143	5
Deletion	Chr3	28733881	28733888	7
Deletion	Chr6	29451560	29451561	1
Deletion	Chr1	32581453	32581459	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6279849	6316202	OsKitaake02g084900
Inversion	Chr2	6279854	6316236	OsKitaake02g084900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes