Search Kitaake

Mutant Information

Mutant Name	FN3839-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3839-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11151954 C-T Hetero INTERGENIC
SBS Chr1 18229412 G-A Hetero INTERGENIC
SBS Chr1 18344061 C-T Hetero INTERGENIC
SBS Chr1 34017657 T-A Hetero INTERGENIC
SBS Chr2 10219449 G-A Hetero INTRON
SBS Chr2 11814254 C-T Homo INTRON
SBS Chr2 17056031 G-T Homo INTERGENIC
SBS Chr2 20676107 T-A Hetero INTERGENIC
SBS Chr2 29007949 T-A Homo INTERGENIC
SBS Chr3 19817388 T-C Hetero INTERGENIC
SBS Chr4 2112758 G-A Hetero INTERGENIC
SBS Chr4 6649613 C-G Hetero UTR_3_PRIME
SBS Chr4 10617233 G-C Hetero INTERGENIC
SBS Chr4 16693125 A-C Hetero INTERGENIC
SBS Chr4 18689012 G-A Homo INTERGENIC
SBS Chr4 36278704 C-G Hetero INTERGENIC
SBS Chr5 7464376 A-G Hetero INTERGENIC
SBS Chr6 12849613 G-A Hetero INTERGENIC
SBS Chr6 12849617 T-C Hetero INTERGENIC
SBS Chr6 12849619 G-A Hetero INTERGENIC
SBS Chr6 14345167 A-C Hetero INTERGENIC
SBS Chr6 26383650 G-C Hetero SYNONYMOUS_CODING
SBS Chr7 14284689 G-A Hetero INTERGENIC
SBS Chr8 10145236 C-T Hetero INTERGENIC
SBS Chr8 19282566 C-A Hetero INTERGENIC
SBS Chr8 19496585 G-A Hetero INTERGENIC
SBS Chr9 5401683 T-G Hetero INTERGENIC
SBS Chr9 7585665 A-G Hetero INTERGENIC
SBS Chr9 13155235 C-T Hetero INTERGENIC
SBS Chr9 16580582 C-G Hetero UTR_3_PRIME
SBS Chr9 17881728 A-C Hetero INTERGENIC
SBS Chr10 4452724 G-A Hetero INTERGENIC
SBS Chr10 5155955 G-A Hetero INTERGENIC
SBS Chr11 6921723 C-T Hetero INTERGENIC
SBS Chr11 8516073 T-G Homo INTERGENIC
SBS Chr11 10324887 T-A Hetero INTERGENIC
SBS Chr11 11838247 C-A Hetero INTERGENIC
SBS Chr12 2032822 G-A Hetero INTERGENIC
SBS Chr12 7931405 T-C Hetero INTERGENIC
SBS Chr12 14432978 C-T Hetero INTERGENIC
SBS Chr12 14432979 G-T Hetero INTERGENIC
SBS Chr12 14432980 A-T Hetero INTERGENIC
SBS Chr12 19795308 A-T Hetero INTERGENIC
SBS Chr12 19795310 T-A Hetero INTERGENIC
SBS Chr12 21907104 A-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2342955 2342966 11 OsKitaake09g012200
Deletion Chr9 5713525 5713527 2
Deletion Chr3 7769320 7769331 11 OsKitaake03g107600
Deletion Chr10 7810001 7821000 10999
Deletion Chr2 8056139 8056152 13
Deletion Chr8 8880711 8880717 6
Deletion Chr2 13497391 13497397 6
Deletion Chr11 14432293 14432299 6
Deletion Chr3 18222500 18222522 22
Deletion Chr10 19501857 19501865 8
Deletion Chr12 20734708 20734710 2
Deletion Chr7 23956359 23956369 10
Deletion Chr4 25327002 25327023 21
Deletion Chr11 27261876 27261877 1 OsKitaake11g222900
Deletion Chr2 30840834 30840839 5 OsKitaake02g314500
Deletion Chr4 35388524 35388536 12
Deletion Chr1 37543504 37543505 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 5627174 5627177 2
Insertion Chr9 14509920 14509923 2
Insertion Chr11 701747 701750 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 7810198 7873649
Inversion Chr10 7873689 8331425

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 8931189 Chr6 15943177
Translocation Chr11 8931230 Chr6 15942825
Translocation Chr11 15037873 Chr1 26280429 OsKitaake11g123300
Translocation Chr11 15037899 Chr1 26263393 OsKitaake11g123300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11151954	C-T	Hetero	INTERGENIC
SBS	Chr1	18229412	G-A	Hetero	INTERGENIC
SBS	Chr1	18344061	C-T	Hetero	INTERGENIC
SBS	Chr1	34017657	T-A	Hetero	INTERGENIC
SBS	Chr2	10219449	G-A	Hetero	INTRON
SBS	Chr2	11814254	C-T	Homo	INTRON
SBS	Chr2	17056031	G-T	Homo	INTERGENIC
SBS	Chr2	20676107	T-A	Hetero	INTERGENIC
SBS	Chr2	29007949	T-A	Homo	INTERGENIC
SBS	Chr3	19817388	T-C	Hetero	INTERGENIC
SBS	Chr4	2112758	G-A	Hetero	INTERGENIC
SBS	Chr4	6649613	C-G	Hetero	UTR_3_PRIME
SBS	Chr4	10617233	G-C	Hetero	INTERGENIC
SBS	Chr4	16693125	A-C	Hetero	INTERGENIC
SBS	Chr4	18689012	G-A	Homo	INTERGENIC
SBS	Chr4	36278704	C-G	Hetero	INTERGENIC
SBS	Chr5	7464376	A-G	Hetero	INTERGENIC
SBS	Chr6	12849613	G-A	Hetero	INTERGENIC
SBS	Chr6	12849617	T-C	Hetero	INTERGENIC
SBS	Chr6	12849619	G-A	Hetero	INTERGENIC
SBS	Chr6	14345167	A-C	Hetero	INTERGENIC
SBS	Chr6	26383650	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	14284689	G-A	Hetero	INTERGENIC
SBS	Chr8	10145236	C-T	Hetero	INTERGENIC
SBS	Chr8	19282566	C-A	Hetero	INTERGENIC
SBS	Chr8	19496585	G-A	Hetero	INTERGENIC
SBS	Chr9	5401683	T-G	Hetero	INTERGENIC
SBS	Chr9	7585665	A-G	Hetero	INTERGENIC
SBS	Chr9	13155235	C-T	Hetero	INTERGENIC
SBS	Chr9	16580582	C-G	Hetero	UTR_3_PRIME
SBS	Chr9	17881728	A-C	Hetero	INTERGENIC
SBS	Chr10	4452724	G-A	Hetero	INTERGENIC
SBS	Chr10	5155955	G-A	Hetero	INTERGENIC
SBS	Chr11	6921723	C-T	Hetero	INTERGENIC
SBS	Chr11	8516073	T-G	Homo	INTERGENIC
SBS	Chr11	10324887	T-A	Hetero	INTERGENIC
SBS	Chr11	11838247	C-A	Hetero	INTERGENIC
SBS	Chr12	2032822	G-A	Hetero	INTERGENIC
SBS	Chr12	7931405	T-C	Hetero	INTERGENIC
SBS	Chr12	14432978	C-T	Hetero	INTERGENIC
SBS	Chr12	14432979	G-T	Hetero	INTERGENIC
SBS	Chr12	14432980	A-T	Hetero	INTERGENIC
SBS	Chr12	19795308	A-T	Hetero	INTERGENIC
SBS	Chr12	19795310	T-A	Hetero	INTERGENIC
SBS	Chr12	21907104	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2342955	2342966	11	OsKitaake09g012200
Deletion	Chr9	5713525	5713527	2
Deletion	Chr3	7769320	7769331	11	OsKitaake03g107600
Deletion	Chr10	7810001	7821000	10999
Deletion	Chr2	8056139	8056152	13
Deletion	Chr8	8880711	8880717	6
Deletion	Chr2	13497391	13497397	6
Deletion	Chr11	14432293	14432299	6
Deletion	Chr3	18222500	18222522	22
Deletion	Chr10	19501857	19501865	8
Deletion	Chr12	20734708	20734710	2
Deletion	Chr7	23956359	23956369	10
Deletion	Chr4	25327002	25327023	21
Deletion	Chr11	27261876	27261877	1	OsKitaake11g222900
Deletion	Chr2	30840834	30840839	5	OsKitaake02g314500
Deletion	Chr4	35388524	35388536	12
Deletion	Chr1	37543504	37543505	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7810198	7873649
Inversion	Chr10	7873689	8331425

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes