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Mutant Information

Mutant Name	FN3841-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3841-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28951646 G-T Hetero INTERGENIC
SBS Chr2 14745309 G-T Homo INTERGENIC
SBS Chr2 28710828 A-G Hetero INTERGENIC
SBS Chr2 36243514 T-C Hetero INTERGENIC
SBS Chr3 26658762 G-A Hetero INTERGENIC
SBS Chr4 218921 C-T Hetero INTERGENIC
SBS Chr4 30741944 G-A Hetero INTRON
SBS Chr5 16923520 T-A Homo INTERGENIC
SBS Chr6 18940608 G-A Hetero INTERGENIC
SBS Chr7 8568492 C-A Hetero INTERGENIC
SBS Chr7 13934815 G-C Hetero INTERGENIC
SBS Chr7 20614972 G-A Hetero INTERGENIC
SBS Chr8 8096261 A-G Hetero INTERGENIC
SBS Chr8 22800503 A-G Hetero INTERGENIC
SBS Chr10 7459026 C-T Hetero INTERGENIC
SBS Chr10 19971957 C-T Hetero INTERGENIC
SBS Chr11 10064243 C-A Homo INTERGENIC
SBS Chr11 20015010 C-G Hetero INTRON
SBS Chr11 28369836 G-C Hetero INTERGENIC
SBS Chr12 8563514 C-T Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 190149 190150 1
Deletion Chr8 5364715 5364716 1
Deletion Chr10 5852278 5852284 6
Deletion Chr8 16642317 16642318 1
Deletion Chr4 18437261 18437262 1
Deletion Chr4 19201982 19202002 20
Deletion Chr8 20902576 20902578 2
Deletion Chr3 28805454 28805455 1
Deletion Chr3 29245040 29245043 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 11876774 11876778 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 10598064 10704653 2
Inversion Chr9 10598497 10704659 2
Inversion Chr6 24613068 24641840 2
Inversion Chr6 24613408 24641839 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10598073 Chr2 32552004 OsKitaake09g066200
Translocation Chr9 10598491 Chr2 32552000 OsKitaake09g066200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28951646	G-T	Hetero	INTERGENIC
SBS	Chr2	14745309	G-T	Homo	INTERGENIC
SBS	Chr2	28710828	A-G	Hetero	INTERGENIC
SBS	Chr2	36243514	T-C	Hetero	INTERGENIC
SBS	Chr3	26658762	G-A	Hetero	INTERGENIC
SBS	Chr4	218921	C-T	Hetero	INTERGENIC
SBS	Chr4	30741944	G-A	Hetero	INTRON
SBS	Chr5	16923520	T-A	Homo	INTERGENIC
SBS	Chr6	18940608	G-A	Hetero	INTERGENIC
SBS	Chr7	8568492	C-A	Hetero	INTERGENIC
SBS	Chr7	13934815	G-C	Hetero	INTERGENIC
SBS	Chr7	20614972	G-A	Hetero	INTERGENIC
SBS	Chr8	8096261	A-G	Hetero	INTERGENIC
SBS	Chr8	22800503	A-G	Hetero	INTERGENIC
SBS	Chr10	7459026	C-T	Hetero	INTERGENIC
SBS	Chr10	19971957	C-T	Hetero	INTERGENIC
SBS	Chr11	10064243	C-A	Homo	INTERGENIC
SBS	Chr11	20015010	C-G	Hetero	INTRON
SBS	Chr11	28369836	G-C	Hetero	INTERGENIC
SBS	Chr12	8563514	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	190149	190150	1
Deletion	Chr8	5364715	5364716	1
Deletion	Chr10	5852278	5852284	6
Deletion	Chr8	16642317	16642318	1
Deletion	Chr4	18437261	18437262	1
Deletion	Chr4	19201982	19202002	20
Deletion	Chr8	20902576	20902578	2
Deletion	Chr3	28805454	28805455	1
Deletion	Chr3	29245040	29245043	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10598064	10704653	2
Inversion	Chr9	10598497	10704659	2
Inversion	Chr6	24613068	24641840	2
Inversion	Chr6	24613408	24641839	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes