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Mutant Information

Mutant Name	FN3842-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3842-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10108634 G-A Hetero INTERGENIC
SBS Chr1 25906213 G-C Homo INTERGENIC
SBS Chr1 34756584 T-A Homo INTRON
SBS Chr1 42592894 G-A Hetero INTERGENIC
SBS Chr1 42896604 G-T Homo INTERGENIC
SBS Chr2 9602937 A-T Hetero INTERGENIC
SBS Chr3 5339682 G-T Hetero INTERGENIC
SBS Chr3 11141080 A-G Hetero INTERGENIC
SBS Chr3 16381730 G-A Hetero INTERGENIC
SBS Chr3 36848410 A-G Homo INTERGENIC
SBS Chr4 19157703 C-T Hetero INTERGENIC
SBS Chr5 1767297 A-T Hetero INTERGENIC
SBS Chr5 17934483 A-G Homo INTERGENIC
SBS Chr5 27829603 A-C Homo INTRON
SBS Chr6 19521043 C-T Hetero INTERGENIC
SBS Chr7 19276736 T-C Hetero INTERGENIC
SBS Chr8 5970439 G-T Hetero INTERGENIC
SBS Chr8 11382699 G-A Hetero INTERGENIC
SBS Chr8 11382700 C-A Hetero INTERGENIC
SBS Chr8 13779825 C-T Hetero INTERGENIC
SBS Chr9 18400423 C-T Homo INTERGENIC
SBS Chr10 2079015 C-T Hetero INTERGENIC
SBS Chr10 10710197 C-T Hetero INTERGENIC
SBS Chr10 12248512 C-T Hetero INTERGENIC
SBS Chr10 16523475 C-T Hetero INTERGENIC
SBS Chr10 16856854 C-T Hetero INTRON
SBS Chr11 7090704 T-C Homo INTERGENIC
SBS Chr11 22619963 A-G Homo INTERGENIC
SBS Chr11 22693279 A-T Hetero INTERGENIC
SBS Chr12 1277533 C-A Homo START_GAINED
SBS Chr12 10604075 C-T Homo INTERGENIC
SBS Chr12 25628881 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g211100

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1619298 1619301 3
Deletion Chr9 2071866 2071867 1
Deletion Chr3 3917659 3917661 2
Deletion Chr8 6595720 6595723 3
Deletion Chr2 6937511 6937513 2
Deletion Chr12 7570001 7767000 196999 17
Deletion Chr8 8378493 8378500 7
Deletion Chr5 12408385 12408392 7
Deletion Chr10 12674127 12674128 1
Deletion Chr3 17811001 17894000 82999 8
Deletion Chr1 17876598 17876603 5
Deletion Chr8 22327747 22327772 25 OsKitaake08g170300
Deletion Chr4 26788447 26788451 4
Deletion Chr4 35323264 35323272 8
Deletion Chr4 36897216 36897217 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7714095 7714100 4
Insertion Chr1 8610612 8610615 2
Insertion Chr2 1609839 1609842 2
Insertion Chr4 20372635 20372637 1
Insertion Chr8 127367 127371 3
Insertion Chr9 18543934 18543938 3
Insertion Chr11 15664556 15664559 2
Insertion Chr12 22826970 22826973 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 21132011 21393771
Inversion Chr8 21132019 21393775

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7800913 Chr1 10284121 OsKitaake01g128900
Translocation Chr12 7801014 Chr1 10284588 OsKitaake01g128900
Translocation Chr3 17810576 Chr1 10313020
Translocation Chr3 17891981 Chr1 10308528 OsKitaake01g129300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10108634	G-A	Hetero	INTERGENIC
SBS	Chr1	25906213	G-C	Homo	INTERGENIC
SBS	Chr1	34756584	T-A	Homo	INTRON
SBS	Chr1	42592894	G-A	Hetero	INTERGENIC
SBS	Chr1	42896604	G-T	Homo	INTERGENIC
SBS	Chr2	9602937	A-T	Hetero	INTERGENIC
SBS	Chr3	5339682	G-T	Hetero	INTERGENIC
SBS	Chr3	11141080	A-G	Hetero	INTERGENIC
SBS	Chr3	16381730	G-A	Hetero	INTERGENIC
SBS	Chr3	36848410	A-G	Homo	INTERGENIC
SBS	Chr4	19157703	C-T	Hetero	INTERGENIC
SBS	Chr5	1767297	A-T	Hetero	INTERGENIC
SBS	Chr5	17934483	A-G	Homo	INTERGENIC
SBS	Chr5	27829603	A-C	Homo	INTRON
SBS	Chr6	19521043	C-T	Hetero	INTERGENIC
SBS	Chr7	19276736	T-C	Hetero	INTERGENIC
SBS	Chr8	5970439	G-T	Hetero	INTERGENIC
SBS	Chr8	11382699	G-A	Hetero	INTERGENIC
SBS	Chr8	11382700	C-A	Hetero	INTERGENIC
SBS	Chr8	13779825	C-T	Hetero	INTERGENIC
SBS	Chr9	18400423	C-T	Homo	INTERGENIC
SBS	Chr10	2079015	C-T	Hetero	INTERGENIC
SBS	Chr10	10710197	C-T	Hetero	INTERGENIC
SBS	Chr10	12248512	C-T	Hetero	INTERGENIC
SBS	Chr10	16523475	C-T	Hetero	INTERGENIC
SBS	Chr10	16856854	C-T	Hetero	INTRON
SBS	Chr11	7090704	T-C	Homo	INTERGENIC
SBS	Chr11	22619963	A-G	Homo	INTERGENIC
SBS	Chr11	22693279	A-T	Hetero	INTERGENIC
SBS	Chr12	1277533	C-A	Homo	START_GAINED
SBS	Chr12	10604075	C-T	Homo	INTERGENIC
SBS	Chr12	25628881	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g211100

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1619298	1619301	3
Deletion	Chr9	2071866	2071867	1
Deletion	Chr3	3917659	3917661	2
Deletion	Chr8	6595720	6595723	3
Deletion	Chr2	6937511	6937513	2
Deletion	Chr12	7570001	7767000	196999	17
Deletion	Chr8	8378493	8378500	7
Deletion	Chr5	12408385	12408392	7
Deletion	Chr10	12674127	12674128	1
Deletion	Chr3	17811001	17894000	82999	8
Deletion	Chr1	17876598	17876603	5
Deletion	Chr8	22327747	22327772	25	OsKitaake08g170300
Deletion	Chr4	26788447	26788451	4
Deletion	Chr4	35323264	35323272	8
Deletion	Chr4	36897216	36897217	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	21132011	21393771
Inversion	Chr8	21132019	21393775

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes