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Mutant Information

Mutant Name	FN3843-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3843-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4348393 A-T Hetero INTRON
SBS Chr1 19967684 C-T Hetero INTERGENIC
SBS Chr1 23089295 T-C Hetero INTERGENIC
SBS Chr1 34458444 A-T Hetero INTRON
SBS Chr1 36206951 A-G Hetero INTERGENIC
SBS Chr3 19246403 T-G Hetero INTERGENIC
SBS Chr3 25461307 C-T Hetero INTRON
SBS Chr4 1819695 C-G Homo INTERGENIC
SBS Chr4 4567408 C-T Hetero INTERGENIC
SBS Chr4 15018108 G-A Hetero INTERGENIC
SBS Chr4 35791226 C-T Hetero INTERGENIC
SBS Chr5 3870666 C-T Hetero INTERGENIC
SBS Chr5 9561210 T-C Hetero INTERGENIC
SBS Chr5 29294441 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 1298506 T-A Hetero INTERGENIC
SBS Chr7 25782932 G-T Hetero INTERGENIC
SBS Chr7 25782946 G-A Hetero INTERGENIC
SBS Chr7 25782947 C-A Hetero INTERGENIC
SBS Chr8 288919 C-T Hetero INTERGENIC
SBS Chr8 2022777 G-A Hetero INTERGENIC
SBS Chr8 20048665 T-A Hetero INTERGENIC
SBS Chr8 20749055 T-A Homo INTERGENIC
SBS Chr8 25777647 G-C Hetero UTR_3_PRIME
SBS Chr9 2826843 G-A Hetero INTERGENIC
SBS Chr9 8064820 A-G Hetero INTRON
SBS Chr9 10731244 C-T Hetero INTERGENIC
SBS Chr9 14417443 T-C Hetero SYNONYMOUS_CODING
SBS Chr9 20281999 A-T Hetero INTERGENIC
SBS Chr10 6496333 T-C Hetero INTERGENIC
SBS Chr10 6496334 A-T Hetero INTERGENIC
SBS Chr10 6496335 G-T Hetero INTERGENIC
SBS Chr10 8820586 G-T Hetero INTERGENIC
SBS Chr11 7407941 C-A Hetero INTERGENIC
SBS Chr12 13071140 T-C Hetero INTERGENIC
SBS Chr12 13851380 A-G Hetero UTR_5_PRIME
SBS Chr12 19489106 C-A Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1373001 1382000 8999 OsKitaake05g017100
Deletion Chr12 3876001 3876020 19
Deletion Chr10 5928001 5936000 7999 OsKitaake10g040700
Deletion Chr6 6094726 6094727 1
Deletion Chr1 6319527 6319536 9
Deletion Chr2 6973245 6973251 6
Deletion Chr12 9672885 9672896 11
Deletion Chr1 16734260 16734273 13
Deletion Chr7 16836910 16836911 1
Deletion Chr3 17727852 17727862 10
Deletion Chr11 17739933 17739943 10
Deletion Chr3 20387026 20387037 11
Deletion Chr12 21373136 21373138 2
Deletion Chr11 21640406 21640407 1 OsKitaake11g171200
Deletion Chr2 23429427 23429436 9 OsKitaake02g229500
Deletion Chr4 24459001 24473000 13999
Deletion Chr1 25997661 25997662 1 OsKitaake01g252800
Deletion Chr5 27836185 27836192 7
Deletion Chr3 28300552 28300557 5
Deletion Chr11 29015824 29015828 4
Deletion Chr11 29682292 29682298 6
Deletion Chr2 32201249 32201267 18
Deletion Chr4 34798778 34798780 2
Deletion Chr1 42302001 42316000 13999 OsKitaake01g466400

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr8 3379517 3379520 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 5616477 6564784
Inversion Chr1 5616534 6564851

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4348393	A-T	Hetero	INTRON
SBS	Chr1	19967684	C-T	Hetero	INTERGENIC
SBS	Chr1	23089295	T-C	Hetero	INTERGENIC
SBS	Chr1	34458444	A-T	Hetero	INTRON
SBS	Chr1	36206951	A-G	Hetero	INTERGENIC
SBS	Chr3	19246403	T-G	Hetero	INTERGENIC
SBS	Chr3	25461307	C-T	Hetero	INTRON
SBS	Chr4	1819695	C-G	Homo	INTERGENIC
SBS	Chr4	4567408	C-T	Hetero	INTERGENIC
SBS	Chr4	15018108	G-A	Hetero	INTERGENIC
SBS	Chr4	35791226	C-T	Hetero	INTERGENIC
SBS	Chr5	3870666	C-T	Hetero	INTERGENIC
SBS	Chr5	9561210	T-C	Hetero	INTERGENIC
SBS	Chr5	29294441	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	1298506	T-A	Hetero	INTERGENIC
SBS	Chr7	25782932	G-T	Hetero	INTERGENIC
SBS	Chr7	25782946	G-A	Hetero	INTERGENIC
SBS	Chr7	25782947	C-A	Hetero	INTERGENIC
SBS	Chr8	288919	C-T	Hetero	INTERGENIC
SBS	Chr8	2022777	G-A	Hetero	INTERGENIC
SBS	Chr8	20048665	T-A	Hetero	INTERGENIC
SBS	Chr8	20749055	T-A	Homo	INTERGENIC
SBS	Chr8	25777647	G-C	Hetero	UTR_3_PRIME
SBS	Chr9	2826843	G-A	Hetero	INTERGENIC
SBS	Chr9	8064820	A-G	Hetero	INTRON
SBS	Chr9	10731244	C-T	Hetero	INTERGENIC
SBS	Chr9	14417443	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	20281999	A-T	Hetero	INTERGENIC
SBS	Chr10	6496333	T-C	Hetero	INTERGENIC
SBS	Chr10	6496334	A-T	Hetero	INTERGENIC
SBS	Chr10	6496335	G-T	Hetero	INTERGENIC
SBS	Chr10	8820586	G-T	Hetero	INTERGENIC
SBS	Chr11	7407941	C-A	Hetero	INTERGENIC
SBS	Chr12	13071140	T-C	Hetero	INTERGENIC
SBS	Chr12	13851380	A-G	Hetero	UTR_5_PRIME
SBS	Chr12	19489106	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1373001	1382000	8999	OsKitaake05g017100
Deletion	Chr12	3876001	3876020	19
Deletion	Chr10	5928001	5936000	7999	OsKitaake10g040700
Deletion	Chr6	6094726	6094727	1
Deletion	Chr1	6319527	6319536	9
Deletion	Chr2	6973245	6973251	6
Deletion	Chr12	9672885	9672896	11
Deletion	Chr1	16734260	16734273	13
Deletion	Chr7	16836910	16836911	1
Deletion	Chr3	17727852	17727862	10
Deletion	Chr11	17739933	17739943	10
Deletion	Chr3	20387026	20387037	11
Deletion	Chr12	21373136	21373138	2
Deletion	Chr11	21640406	21640407	1	OsKitaake11g171200
Deletion	Chr2	23429427	23429436	9	OsKitaake02g229500
Deletion	Chr4	24459001	24473000	13999
Deletion	Chr1	25997661	25997662	1	OsKitaake01g252800
Deletion	Chr5	27836185	27836192	7
Deletion	Chr3	28300552	28300557	5
Deletion	Chr11	29015824	29015828	4
Deletion	Chr11	29682292	29682298	6
Deletion	Chr2	32201249	32201267	18
Deletion	Chr4	34798778	34798780	2
Deletion	Chr1	42302001	42316000	13999	OsKitaake01g466400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5616477	6564784
Inversion	Chr1	5616534	6564851

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes