Search Kitaake

Mutant Information

Mutant Name	FN3844-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3844-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 691098 C-A Hetero INTERGENIC
SBS Chr1 12208591 G-A Hetero INTERGENIC
SBS Chr1 13610358 C-A Hetero INTERGENIC
SBS Chr1 32563376 C-A Hetero INTERGENIC
SBS Chr2 7616060 C-T Hetero INTERGENIC
SBS Chr2 21226149 A-G Hetero INTERGENIC
SBS Chr2 23477161 T-C Homo INTERGENIC
SBS Chr2 26712230 G-A Hetero INTERGENIC
SBS Chr2 27140274 C-T Hetero INTERGENIC
SBS Chr2 32101623 T-C Hetero INTERGENIC
SBS Chr2 32438752 G-A Hetero UTR_5_PRIME
SBS Chr2 32438753 C-T Hetero UTR_5_PRIME
SBS Chr2 37107799 C-T Homo INTERGENIC
SBS Chr3 18244097 C-T Homo INTERGENIC
SBS Chr3 25737222 G-A Homo INTRON
SBS Chr3 36541924 C-T Homo INTERGENIC
SBS Chr3 37497952 T-A Hetero UTR_5_PRIME
SBS Chr4 24814463 G-A Hetero INTERGENIC
SBS Chr4 26742384 T-A Hetero INTERGENIC
SBS Chr4 33224651 G-A Hetero INTERGENIC
SBS Chr5 973178 T-C Hetero INTERGENIC
SBS Chr5 5165458 A-C Hetero INTERGENIC
SBS Chr5 16443005 C-T Hetero INTERGENIC
SBS Chr5 27281171 G-A Hetero INTERGENIC
SBS Chr6 1176511 G-A Homo INTERGENIC
SBS Chr6 2815555 T-G Homo INTRON
SBS Chr6 16983974 A-G Hetero INTRON
SBS Chr7 7284791 G-A Homo INTERGENIC
SBS Chr8 1127844 C-T Hetero UTR_3_PRIME
SBS Chr9 253984 G-A Hetero INTRON
SBS Chr9 366259 C-T Homo INTERGENIC
SBS Chr9 20362020 A-T Homo INTERGENIC
SBS Chr10 20321253 T-C Hetero INTRON
SBS Chr11 16705322 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g132200
SBS Chr11 26765353 T-A Hetero INTERGENIC
SBS Chr12 19058726 G-A Hetero INTRON
SBS Chr12 20764502 A-T Hetero INTERGENIC
SBS Chr12 22801037 T-C Hetero INTERGENIC
SBS Chr12 23477368 T-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 779839 779856 17
Deletion Chr5 1000699 1000705 6
Deletion Chr11 1257001 1304000 46999 6
Deletion Chr8 3670922 3670925 3
Deletion Chr7 3972961 3972964 3
Deletion Chr7 6938420 6938423 3
Deletion Chr11 8129697 8129705 8
Deletion Chr4 13192567 13192569 2
Deletion Chr2 14413278 14413286 8
Deletion Chr3 16506671 16506675 4
Deletion Chr8 19321681 19321699 18
Deletion Chr11 27625734 27625737 3 OsKitaake11g225100
Deletion Chr4 33236181 33236186 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43431302 43431307 4
Insertion Chr9 7509191 7509194 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 3514109 4060455 2
Inversion Chr3 3514130 4060512 2
Inversion Chr5 4557808 5169749
Inversion Chr5 4557820 5169754
Inversion Chr3 28757206 29181924 OsKitaake03g297900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 28250487 Chr2 10461686 OsKitaake02g124400
Translocation Chr4 28250490 Chr2 10460750 OsKitaake02g124400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	691098	C-A	Hetero	INTERGENIC
SBS	Chr1	12208591	G-A	Hetero	INTERGENIC
SBS	Chr1	13610358	C-A	Hetero	INTERGENIC
SBS	Chr1	32563376	C-A	Hetero	INTERGENIC
SBS	Chr2	7616060	C-T	Hetero	INTERGENIC
SBS	Chr2	21226149	A-G	Hetero	INTERGENIC
SBS	Chr2	23477161	T-C	Homo	INTERGENIC
SBS	Chr2	26712230	G-A	Hetero	INTERGENIC
SBS	Chr2	27140274	C-T	Hetero	INTERGENIC
SBS	Chr2	32101623	T-C	Hetero	INTERGENIC
SBS	Chr2	32438752	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	32438753	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	37107799	C-T	Homo	INTERGENIC
SBS	Chr3	18244097	C-T	Homo	INTERGENIC
SBS	Chr3	25737222	G-A	Homo	INTRON
SBS	Chr3	36541924	C-T	Homo	INTERGENIC
SBS	Chr3	37497952	T-A	Hetero	UTR_5_PRIME
SBS	Chr4	24814463	G-A	Hetero	INTERGENIC
SBS	Chr4	26742384	T-A	Hetero	INTERGENIC
SBS	Chr4	33224651	G-A	Hetero	INTERGENIC
SBS	Chr5	973178	T-C	Hetero	INTERGENIC
SBS	Chr5	5165458	A-C	Hetero	INTERGENIC
SBS	Chr5	16443005	C-T	Hetero	INTERGENIC
SBS	Chr5	27281171	G-A	Hetero	INTERGENIC
SBS	Chr6	1176511	G-A	Homo	INTERGENIC
SBS	Chr6	2815555	T-G	Homo	INTRON
SBS	Chr6	16983974	A-G	Hetero	INTRON
SBS	Chr7	7284791	G-A	Homo	INTERGENIC
SBS	Chr8	1127844	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	253984	G-A	Hetero	INTRON
SBS	Chr9	366259	C-T	Homo	INTERGENIC
SBS	Chr9	20362020	A-T	Homo	INTERGENIC
SBS	Chr10	20321253	T-C	Hetero	INTRON
SBS	Chr11	16705322	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g132200
SBS	Chr11	26765353	T-A	Hetero	INTERGENIC
SBS	Chr12	19058726	G-A	Hetero	INTRON
SBS	Chr12	20764502	A-T	Hetero	INTERGENIC
SBS	Chr12	22801037	T-C	Hetero	INTERGENIC
SBS	Chr12	23477368	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	779839	779856	17
Deletion	Chr5	1000699	1000705	6
Deletion	Chr11	1257001	1304000	46999	6
Deletion	Chr8	3670922	3670925	3
Deletion	Chr7	3972961	3972964	3
Deletion	Chr7	6938420	6938423	3
Deletion	Chr11	8129697	8129705	8
Deletion	Chr4	13192567	13192569	2
Deletion	Chr2	14413278	14413286	8
Deletion	Chr3	16506671	16506675	4
Deletion	Chr8	19321681	19321699	18
Deletion	Chr11	27625734	27625737	3	OsKitaake11g225100
Deletion	Chr4	33236181	33236186	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3514109	4060455	2
Inversion	Chr3	3514130	4060512	2
Inversion	Chr5	4557808	5169749
Inversion	Chr5	4557820	5169754
Inversion	Chr3	28757206	29181924	OsKitaake03g297900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes