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Mutant Information

Mutant Name	FN3845-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3845-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1931180 G-A Homo INTERGENIC
SBS Chr1 3994610 T-A Homo INTERGENIC
SBS Chr1 5563463 G-A Homo INTERGENIC
SBS Chr1 5986600 T-A Hetero INTERGENIC
SBS Chr1 13080173 C-T Homo INTRON
SBS Chr1 37172322 A-T Hetero INTERGENIC
SBS Chr3 7989856 G-T Homo INTERGENIC
SBS Chr3 7989857 A-T Homo INTERGENIC
SBS Chr3 18445095 C-T Hetero INTRON
SBS Chr4 5545694 C-T Homo INTERGENIC
SBS Chr4 16673565 C-A Homo INTRON
SBS Chr4 18189822 A-G Hetero INTERGENIC
SBS Chr5 7473141 T-C Hetero INTERGENIC
SBS Chr5 10998582 C-T Hetero INTERGENIC
SBS Chr6 12481938 C-A Homo INTERGENIC
SBS Chr6 20023591 C-T Hetero INTERGENIC
SBS Chr7 313886 C-T Hetero INTERGENIC
SBS Chr7 17893099 C-A Hetero INTERGENIC
SBS Chr8 17017514 G-A Hetero INTERGENIC
SBS Chr8 27749051 C-T Homo SYNONYMOUS_CODING
SBS Chr9 10195324 T-C Homo INTERGENIC
SBS Chr9 10218590 G-T Homo INTERGENIC
SBS Chr9 15209540 C-T Homo INTERGENIC
SBS Chr9 17324232 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g130200
SBS Chr9 17324233 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 1222001 T-C Homo UTR_3_PRIME
SBS Chr10 7220347 C-A Hetero INTERGENIC
SBS Chr10 7824323 A-G Homo INTERGENIC
SBS Chr10 17771122 T-C Hetero INTERGENIC
SBS Chr10 17975150 C-T Hetero INTERGENIC
SBS Chr11 6436881 G-T Hetero INTERGENIC
SBS Chr11 8922666 C-A Hetero INTERGENIC
SBS Chr11 9903396 A-T Hetero INTERGENIC
SBS Chr11 10804561 C-G Hetero INTERGENIC
SBS Chr11 15583199 G-A Hetero INTERGENIC
SBS Chr11 21254820 C-G Hetero INTERGENIC
SBS Chr11 22353926 C-T Hetero INTERGENIC
SBS Chr12 14316927 C-T Hetero INTERGENIC
SBS Chr12 21923833 C-T Hetero INTERGENIC
SBS Chr12 22998493 G-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 474981 474982 1
Deletion Chr7 1065839 1065850 11
Deletion Chr3 1253431 1253444 13
Deletion Chr2 2630917 2630929 12 OsKitaake02g037700
Deletion Chr1 4752790 4752798 8 OsKitaake01g063300
Deletion Chr4 7604613 7604622 9
Deletion Chr8 8353839 8353841 2
Deletion Chr1 12864807 12864817 10
Deletion Chr4 15357520 15357532 12 OsKitaake04g073800
Deletion Chr6 18835635 18835639 4
Deletion Chr11 20782490 20782514 24
Deletion Chr4 21901563 21901564 1 OsKitaake04g126600
Deletion Chr7 25577199 25577207 8
Deletion Chr1 31807377 31807382 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41346756 41346759 2
Insertion Chr9 12635637 12635640 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 5993386 6372024
Inversion Chr11 5993390 6372027
Inversion Chr3 15271317 15972261 OsKitaake03g204400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 26391636 Chr1 12847059 OsKitaake11g213900
Translocation Chr11 26391638 Chr1 12845834 OsKitaake11g213900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1931180	G-A	Homo	INTERGENIC
SBS	Chr1	3994610	T-A	Homo	INTERGENIC
SBS	Chr1	5563463	G-A	Homo	INTERGENIC
SBS	Chr1	5986600	T-A	Hetero	INTERGENIC
SBS	Chr1	13080173	C-T	Homo	INTRON
SBS	Chr1	37172322	A-T	Hetero	INTERGENIC
SBS	Chr3	7989856	G-T	Homo	INTERGENIC
SBS	Chr3	7989857	A-T	Homo	INTERGENIC
SBS	Chr3	18445095	C-T	Hetero	INTRON
SBS	Chr4	5545694	C-T	Homo	INTERGENIC
SBS	Chr4	16673565	C-A	Homo	INTRON
SBS	Chr4	18189822	A-G	Hetero	INTERGENIC
SBS	Chr5	7473141	T-C	Hetero	INTERGENIC
SBS	Chr5	10998582	C-T	Hetero	INTERGENIC
SBS	Chr6	12481938	C-A	Homo	INTERGENIC
SBS	Chr6	20023591	C-T	Hetero	INTERGENIC
SBS	Chr7	313886	C-T	Hetero	INTERGENIC
SBS	Chr7	17893099	C-A	Hetero	INTERGENIC
SBS	Chr8	17017514	G-A	Hetero	INTERGENIC
SBS	Chr8	27749051	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	10195324	T-C	Homo	INTERGENIC
SBS	Chr9	10218590	G-T	Homo	INTERGENIC
SBS	Chr9	15209540	C-T	Homo	INTERGENIC
SBS	Chr9	17324232	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g130200
SBS	Chr9	17324233	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	1222001	T-C	Homo	UTR_3_PRIME
SBS	Chr10	7220347	C-A	Hetero	INTERGENIC
SBS	Chr10	7824323	A-G	Homo	INTERGENIC
SBS	Chr10	17771122	T-C	Hetero	INTERGENIC
SBS	Chr10	17975150	C-T	Hetero	INTERGENIC
SBS	Chr11	6436881	G-T	Hetero	INTERGENIC
SBS	Chr11	8922666	C-A	Hetero	INTERGENIC
SBS	Chr11	9903396	A-T	Hetero	INTERGENIC
SBS	Chr11	10804561	C-G	Hetero	INTERGENIC
SBS	Chr11	15583199	G-A	Hetero	INTERGENIC
SBS	Chr11	21254820	C-G	Hetero	INTERGENIC
SBS	Chr11	22353926	C-T	Hetero	INTERGENIC
SBS	Chr12	14316927	C-T	Hetero	INTERGENIC
SBS	Chr12	21923833	C-T	Hetero	INTERGENIC
SBS	Chr12	22998493	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	474981	474982	1
Deletion	Chr7	1065839	1065850	11
Deletion	Chr3	1253431	1253444	13
Deletion	Chr2	2630917	2630929	12	OsKitaake02g037700
Deletion	Chr1	4752790	4752798	8	OsKitaake01g063300
Deletion	Chr4	7604613	7604622	9
Deletion	Chr8	8353839	8353841	2
Deletion	Chr1	12864807	12864817	10
Deletion	Chr4	15357520	15357532	12	OsKitaake04g073800
Deletion	Chr6	18835635	18835639	4
Deletion	Chr11	20782490	20782514	24
Deletion	Chr4	21901563	21901564	1	OsKitaake04g126600
Deletion	Chr7	25577199	25577207	8
Deletion	Chr1	31807377	31807382	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5993386	6372024
Inversion	Chr11	5993390	6372027
Inversion	Chr3	15271317	15972261	OsKitaake03g204400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes