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Mutant Information

Mutant Name	FN3846-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3846-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11656118 C-T Hetero INTERGENIC
SBS Chr1 28039079 C-A Hetero INTERGENIC
SBS Chr1 30450275 A-C Hetero INTRON
SBS Chr1 31235089 G-A Homo INTERGENIC
SBS Chr1 43803193 G-A Hetero INTERGENIC
SBS Chr2 15766573 A-T Hetero INTERGENIC
SBS Chr2 27448977 C-T Hetero INTERGENIC
SBS Chr2 29173406 A-T Hetero INTERGENIC
SBS Chr3 7154826 C-A Hetero INTERGENIC
SBS Chr3 20145456 C-T Hetero INTERGENIC
SBS Chr3 21772761 T-C Hetero INTERGENIC
SBS Chr3 34344987 T-G Hetero INTERGENIC
SBS Chr3 35902320 G-A Hetero INTERGENIC
SBS Chr4 13399533 T-C Hetero INTERGENIC
SBS Chr4 13980900 C-G Hetero INTRON
SBS Chr4 14565645 G-A Hetero INTERGENIC
SBS Chr4 17354599 T-C Hetero INTERGENIC
SBS Chr4 18350316 G-T Hetero INTERGENIC
SBS Chr4 31724985 A-T Hetero INTERGENIC
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 13944444 G-A Homo INTERGENIC
SBS Chr5 16061910 A-T Hetero INTRON
SBS Chr6 1933903 G-T Hetero INTERGENIC
SBS Chr6 4710762 A-G Homo INTRON
SBS Chr6 5634540 A-G Homo INTERGENIC
SBS Chr6 19529701 G-A Homo INTERGENIC
SBS Chr6 22413248 C-T Homo INTRON
SBS Chr6 24934171 C-A Homo INTERGENIC
SBS Chr6 29531167 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g274200
SBS Chr7 8827242 G-A Hetero INTERGENIC
SBS Chr7 9108711 G-A Hetero INTERGENIC
SBS Chr7 11982644 C-T Hetero INTERGENIC
SBS Chr7 13329547 A-G Hetero INTERGENIC
SBS Chr7 17516911 G-A Hetero INTERGENIC
SBS Chr7 27177057 T-C Homo INTERGENIC
SBS Chr7 27177205 A-G Homo INTERGENIC
SBS Chr7 28095789 G-A Hetero INTERGENIC
SBS Chr8 1498957 T-A Hetero INTERGENIC
SBS Chr8 15086924 C-T Hetero INTERGENIC
SBS Chr8 17295978 G-A Hetero INTERGENIC
SBS Chr8 25390513 A-T Hetero INTERGENIC
SBS Chr9 621929 G-A Hetero INTERGENIC
SBS Chr9 2240737 G-A Hetero INTERGENIC
SBS Chr10 11888546 T-C Hetero INTERGENIC
SBS Chr11 7804534 T-A Homo UTR_3_PRIME
SBS Chr11 12002131 G-A Hetero INTERGENIC
SBS Chr11 27961819 T-C Hetero INTERGENIC
SBS Chr12 5494053 C-T Hetero INTRON
SBS Chr12 19560947 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 23958291 A-C Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 309374 309375 1
Deletion Chr12 3915185 3915187 2
Deletion Chr11 5151077 5151095 18
Deletion Chr7 5932806 5932820 14
Deletion Chr3 6006752 6006771 19
Deletion Chr6 9113868 9113887 19 OsKitaake06g109400
Deletion Chr3 13265494 13265504 10
Deletion Chr8 18191524 18191525 1
Deletion Chr12 20475849 20475850 1
Deletion Chr8 24047659 24047660 1
Deletion Chr4 25783962 25783963 1 OsKitaake04g179500
Deletion Chr4 26384679 26384688 9
Deletion Chr6 26810545 26810553 8
Deletion Chr11 28887063 28887064 1
Deletion Chr4 30305232 30305248 16

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 5568156 5568160 3
Insertion Chr2 35230454 35230457 2
Insertion Chr6 17628371 17628374 2
Insertion Chr7 4332145 4332148 2
Insertion Chr8 15297092 15297094 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 2257147 2530128 OsKitaake07g033700
Inversion Chr7 2257156 2299834
Inversion Chr3 3084526 3494360 OsKitaake03g043300
Inversion Chr4 8447427 8719827 OsKitaake04g044800
Inversion Chr4 8447478 8719928 OsKitaake04g044800

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 797298 Chr3 3084491 OsKitaake03g043300
Translocation Chr9 798630 Chr3 3494357
Translocation Chr11 23675898 Chr2 15975290
Translocation Chr11 23676482 Chr2 15975277
Translocation Chr6 30161904 Chr5 3625162 OsKitaake05g043950
Translocation Chr6 30162554 Chr5 2252069 OsKitaake05g025200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11656118	C-T	Hetero	INTERGENIC
SBS	Chr1	28039079	C-A	Hetero	INTERGENIC
SBS	Chr1	30450275	A-C	Hetero	INTRON
SBS	Chr1	31235089	G-A	Homo	INTERGENIC
SBS	Chr1	43803193	G-A	Hetero	INTERGENIC
SBS	Chr2	15766573	A-T	Hetero	INTERGENIC
SBS	Chr2	27448977	C-T	Hetero	INTERGENIC
SBS	Chr2	29173406	A-T	Hetero	INTERGENIC
SBS	Chr3	7154826	C-A	Hetero	INTERGENIC
SBS	Chr3	20145456	C-T	Hetero	INTERGENIC
SBS	Chr3	21772761	T-C	Hetero	INTERGENIC
SBS	Chr3	34344987	T-G	Hetero	INTERGENIC
SBS	Chr3	35902320	G-A	Hetero	INTERGENIC
SBS	Chr4	13399533	T-C	Hetero	INTERGENIC
SBS	Chr4	13980900	C-G	Hetero	INTRON
SBS	Chr4	14565645	G-A	Hetero	INTERGENIC
SBS	Chr4	17354599	T-C	Hetero	INTERGENIC
SBS	Chr4	18350316	G-T	Hetero	INTERGENIC
SBS	Chr4	31724985	A-T	Hetero	INTERGENIC
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	13944444	G-A	Homo	INTERGENIC
SBS	Chr5	16061910	A-T	Hetero	INTRON
SBS	Chr6	1933903	G-T	Hetero	INTERGENIC
SBS	Chr6	4710762	A-G	Homo	INTRON
SBS	Chr6	5634540	A-G	Homo	INTERGENIC
SBS	Chr6	19529701	G-A	Homo	INTERGENIC
SBS	Chr6	22413248	C-T	Homo	INTRON
SBS	Chr6	24934171	C-A	Homo	INTERGENIC
SBS	Chr6	29531167	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g274200
SBS	Chr7	8827242	G-A	Hetero	INTERGENIC
SBS	Chr7	9108711	G-A	Hetero	INTERGENIC
SBS	Chr7	11982644	C-T	Hetero	INTERGENIC
SBS	Chr7	13329547	A-G	Hetero	INTERGENIC
SBS	Chr7	17516911	G-A	Hetero	INTERGENIC
SBS	Chr7	27177057	T-C	Homo	INTERGENIC
SBS	Chr7	27177205	A-G	Homo	INTERGENIC
SBS	Chr7	28095789	G-A	Hetero	INTERGENIC
SBS	Chr8	1498957	T-A	Hetero	INTERGENIC
SBS	Chr8	15086924	C-T	Hetero	INTERGENIC
SBS	Chr8	17295978	G-A	Hetero	INTERGENIC
SBS	Chr8	25390513	A-T	Hetero	INTERGENIC
SBS	Chr9	621929	G-A	Hetero	INTERGENIC
SBS	Chr9	2240737	G-A	Hetero	INTERGENIC
SBS	Chr10	11888546	T-C	Hetero	INTERGENIC
SBS	Chr11	7804534	T-A	Homo	UTR_3_PRIME
SBS	Chr11	12002131	G-A	Hetero	INTERGENIC
SBS	Chr11	27961819	T-C	Hetero	INTERGENIC
SBS	Chr12	5494053	C-T	Hetero	INTRON
SBS	Chr12	19560947	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	23958291	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	309374	309375	1
Deletion	Chr12	3915185	3915187	2
Deletion	Chr11	5151077	5151095	18
Deletion	Chr7	5932806	5932820	14
Deletion	Chr3	6006752	6006771	19
Deletion	Chr6	9113868	9113887	19	OsKitaake06g109400
Deletion	Chr3	13265494	13265504	10
Deletion	Chr8	18191524	18191525	1
Deletion	Chr12	20475849	20475850	1
Deletion	Chr8	24047659	24047660	1
Deletion	Chr4	25783962	25783963	1	OsKitaake04g179500
Deletion	Chr4	26384679	26384688	9
Deletion	Chr6	26810545	26810553	8
Deletion	Chr11	28887063	28887064	1
Deletion	Chr4	30305232	30305248	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2257147	2530128	OsKitaake07g033700
Inversion	Chr7	2257156	2299834
Inversion	Chr3	3084526	3494360	OsKitaake03g043300
Inversion	Chr4	8447427	8719827	OsKitaake04g044800
Inversion	Chr4	8447478	8719928	OsKitaake04g044800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes