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Mutant Information

Mutant Name	FN3848-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3848-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 61

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15887640 A-G Homo INTERGENIC
SBS Chr1 18874431 G-C Homo INTERGENIC
SBS Chr1 22010377 C-T Hetero INTERGENIC
SBS Chr1 30569565 T-C Hetero INTRON
SBS Chr1 38902990 C-A Hetero UTR_5_PRIME
SBS Chr2 5389325 A-G Hetero INTRON
SBS Chr2 8319571 C-T Hetero INTERGENIC
SBS Chr2 11743115 T-A Hetero INTERGENIC
SBS Chr2 11743116 T-A Hetero INTERGENIC
SBS Chr2 11743573 G-A Hetero INTERGENIC
SBS Chr2 30038571 A-G Hetero INTERGENIC
SBS Chr3 2284248 G-A Hetero INTERGENIC
SBS Chr3 2284249 C-T Hetero INTERGENIC
SBS Chr3 3606846 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g050900
SBS Chr3 3852020 C-A Hetero SPLICE_SITE_REGION
SBS Chr3 8011925 A-T Homo INTERGENIC
SBS Chr3 8011936 C-T Homo INTERGENIC
SBS Chr3 14361553 A-T Homo NON_SYNONYMOUS_CODING OsKitaake03g187000
SBS Chr3 20766675 G-A Hetero INTERGENIC
SBS Chr3 24953387 G-C Hetero INTERGENIC
SBS Chr3 32372372 A-G Homo INTERGENIC
SBS Chr4 7313734 G-T Hetero INTERGENIC
SBS Chr4 15418534 G-T Hetero INTERGENIC
SBS Chr4 19099283 A-T Hetero INTRON
SBS Chr4 23977327 A-C Hetero INTRON
SBS Chr4 30462170 A-G Hetero INTERGENIC
SBS Chr5 4079868 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g049100
SBS Chr5 15832155 C-A Hetero INTERGENIC
SBS Chr5 16613377 T-A Hetero INTERGENIC
SBS Chr5 17735886 A-G Hetero INTERGENIC
SBS Chr5 20595486 T-C Hetero INTERGENIC
SBS Chr5 20667135 T-C Hetero INTERGENIC
SBS Chr5 29476205 C-T Homo INTERGENIC
SBS Chr6 4876753 G-A Homo INTERGENIC
SBS Chr6 8805759 C-A Hetero INTERGENIC
SBS Chr6 12744858 C-T Hetero INTERGENIC
SBS Chr6 29460604 G-A Homo INTERGENIC
SBS Chr7 1408476 T-C Homo SYNONYMOUS_CODING
SBS Chr7 9829305 C-T Hetero INTERGENIC
SBS Chr7 11000079 C-T Hetero INTERGENIC
SBS Chr7 13969178 G-A Hetero INTERGENIC
SBS Chr7 13969206 C-A Hetero INTERGENIC
SBS Chr7 23206698 C-A Homo INTERGENIC
SBS Chr8 3125933 C-T Hetero INTERGENIC
SBS Chr8 3243073 G-A Hetero INTERGENIC
SBS Chr8 13776066 C-A Hetero INTERGENIC
SBS Chr9 8733087 C-G Hetero INTERGENIC
SBS Chr9 18094323 T-A Hetero INTERGENIC
SBS Chr10 6303158 G-A Hetero INTERGENIC
SBS Chr10 9448787 C-T Hetero INTERGENIC
SBS Chr10 21991672 T-C Homo INTERGENIC
SBS Chr11 3045993 C-A Hetero INTERGENIC
SBS Chr11 10428713 G-T Hetero INTERGENIC
SBS Chr11 10806038 G-A Hetero INTERGENIC
SBS Chr11 11999659 G-C Hetero INTERGENIC
SBS Chr11 16257271 C-T Hetero INTERGENIC
SBS Chr11 20085084 T-C Hetero INTERGENIC
SBS Chr12 6843407 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g077800
SBS Chr12 15345053 G-T Hetero INTERGENIC
SBS Chr12 24834051 G-T Hetero UTR_5_PRIME
SBS Chr12 26178809 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1654520 1654537 17 OsKitaake11g022000
Deletion Chr6 3414261 3414263 2
Deletion Chr8 3849001 3878000 28999 5
Deletion Chr9 7299669 7299670 1
Deletion Chr11 9328001 9376000 47999 3
Deletion Chr11 10059789 10059792 3
Deletion Chr10 11734368 11734381 13
Deletion Chr8 14988869 14988870 1
Deletion Chr5 17698475 17698478 3
Deletion Chr11 23499864 23499941 77
Deletion Chr8 23548817 23548824 7
Deletion Chr7 23717525 23717527 2
Deletion Chr1 24144122 24144159 37
Deletion Chr8 25622863 25622864 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27919977 27919979 1
Insertion Chr6 30677758 30677761 2
Insertion Chr10 9200632 9200635 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3848010 Chr3 25235762 2
Translocation Chr10 13150160 Chr3 26988697
Translocation Chr7 29311360 Chr6 13801906

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15887640	A-G	Homo	INTERGENIC
SBS	Chr1	18874431	G-C	Homo	INTERGENIC
SBS	Chr1	22010377	C-T	Hetero	INTERGENIC
SBS	Chr1	30569565	T-C	Hetero	INTRON
SBS	Chr1	38902990	C-A	Hetero	UTR_5_PRIME
SBS	Chr2	5389325	A-G	Hetero	INTRON
SBS	Chr2	8319571	C-T	Hetero	INTERGENIC
SBS	Chr2	11743115	T-A	Hetero	INTERGENIC
SBS	Chr2	11743116	T-A	Hetero	INTERGENIC
SBS	Chr2	11743573	G-A	Hetero	INTERGENIC
SBS	Chr2	30038571	A-G	Hetero	INTERGENIC
SBS	Chr3	2284248	G-A	Hetero	INTERGENIC
SBS	Chr3	2284249	C-T	Hetero	INTERGENIC
SBS	Chr3	3606846	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g050900
SBS	Chr3	3852020	C-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	8011925	A-T	Homo	INTERGENIC
SBS	Chr3	8011936	C-T	Homo	INTERGENIC
SBS	Chr3	14361553	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g187000
SBS	Chr3	20766675	G-A	Hetero	INTERGENIC
SBS	Chr3	24953387	G-C	Hetero	INTERGENIC
SBS	Chr3	32372372	A-G	Homo	INTERGENIC
SBS	Chr4	7313734	G-T	Hetero	INTERGENIC
SBS	Chr4	15418534	G-T	Hetero	INTERGENIC
SBS	Chr4	19099283	A-T	Hetero	INTRON
SBS	Chr4	23977327	A-C	Hetero	INTRON
SBS	Chr4	30462170	A-G	Hetero	INTERGENIC
SBS	Chr5	4079868	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g049100
SBS	Chr5	15832155	C-A	Hetero	INTERGENIC
SBS	Chr5	16613377	T-A	Hetero	INTERGENIC
SBS	Chr5	17735886	A-G	Hetero	INTERGENIC
SBS	Chr5	20595486	T-C	Hetero	INTERGENIC
SBS	Chr5	20667135	T-C	Hetero	INTERGENIC
SBS	Chr5	29476205	C-T	Homo	INTERGENIC
SBS	Chr6	4876753	G-A	Homo	INTERGENIC
SBS	Chr6	8805759	C-A	Hetero	INTERGENIC
SBS	Chr6	12744858	C-T	Hetero	INTERGENIC
SBS	Chr6	29460604	G-A	Homo	INTERGENIC
SBS	Chr7	1408476	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr7	9829305	C-T	Hetero	INTERGENIC
SBS	Chr7	11000079	C-T	Hetero	INTERGENIC
SBS	Chr7	13969178	G-A	Hetero	INTERGENIC
SBS	Chr7	13969206	C-A	Hetero	INTERGENIC
SBS	Chr7	23206698	C-A	Homo	INTERGENIC
SBS	Chr8	3125933	C-T	Hetero	INTERGENIC
SBS	Chr8	3243073	G-A	Hetero	INTERGENIC
SBS	Chr8	13776066	C-A	Hetero	INTERGENIC
SBS	Chr9	8733087	C-G	Hetero	INTERGENIC
SBS	Chr9	18094323	T-A	Hetero	INTERGENIC
SBS	Chr10	6303158	G-A	Hetero	INTERGENIC
SBS	Chr10	9448787	C-T	Hetero	INTERGENIC
SBS	Chr10	21991672	T-C	Homo	INTERGENIC
SBS	Chr11	3045993	C-A	Hetero	INTERGENIC
SBS	Chr11	10428713	G-T	Hetero	INTERGENIC
SBS	Chr11	10806038	G-A	Hetero	INTERGENIC
SBS	Chr11	11999659	G-C	Hetero	INTERGENIC
SBS	Chr11	16257271	C-T	Hetero	INTERGENIC
SBS	Chr11	20085084	T-C	Hetero	INTERGENIC
SBS	Chr12	6843407	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g077800
SBS	Chr12	15345053	G-T	Hetero	INTERGENIC
SBS	Chr12	24834051	G-T	Hetero	UTR_5_PRIME
SBS	Chr12	26178809	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1654520	1654537	17	OsKitaake11g022000
Deletion	Chr6	3414261	3414263	2
Deletion	Chr8	3849001	3878000	28999	5
Deletion	Chr9	7299669	7299670	1
Deletion	Chr11	9328001	9376000	47999	3
Deletion	Chr11	10059789	10059792	3
Deletion	Chr10	11734368	11734381	13
Deletion	Chr8	14988869	14988870	1
Deletion	Chr5	17698475	17698478	3
Deletion	Chr11	23499864	23499941	77
Deletion	Chr8	23548817	23548824	7
Deletion	Chr7	23717525	23717527	2
Deletion	Chr1	24144122	24144159	37
Deletion	Chr8	25622863	25622864	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3848010	Chr3	25235762	2
Translocation	Chr10	13150160	Chr3	26988697
Translocation	Chr7	29311360	Chr6	13801906

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes