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Mutant Information

Mutant Name	FN3849-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3849-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10852736 G-T Hetero INTERGENIC
SBS Chr1 11821438 C-T Hetero INTERGENIC
SBS Chr1 14495662 G-A Hetero INTRON
SBS Chr1 20858117 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g204400
SBS Chr1 40094368 G-C Hetero INTRON
SBS Chr1 41300092 A-G Hetero INTERGENIC
SBS Chr2 10968525 C-T Hetero INTRON
SBS Chr2 15574445 T-A Hetero INTERGENIC
SBS Chr2 15574457 G-T Hetero INTERGENIC
SBS Chr2 16846093 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g171900
SBS Chr2 24148465 T-A Hetero INTRON
SBS Chr2 25516301 A-T Hetero INTERGENIC
SBS Chr2 27499567 A-T Hetero INTRON
SBS Chr3 3057233 T-C Hetero UTR_3_PRIME
SBS Chr3 4762464 T-C Homo INTERGENIC
SBS Chr3 9595674 C-T Homo INTERGENIC
SBS Chr3 15741729 G-A Hetero INTERGENIC
SBS Chr3 22554360 G-T Hetero INTERGENIC
SBS Chr3 23302616 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 24775229 G-A Homo INTERGENIC
SBS Chr3 29194519 T-C Hetero INTERGENIC
SBS Chr3 33630505 G-A Hetero INTERGENIC
SBS Chr4 12078354 T-A Homo UTR_5_PRIME
SBS Chr4 16321714 A-C Homo INTERGENIC
SBS Chr4 22071013 A-T Hetero INTRON
SBS Chr4 31811070 T-A Hetero INTERGENIC
SBS Chr5 8568308 C-T Hetero INTERGENIC
SBS Chr5 9736316 T-C Hetero INTERGENIC
SBS Chr5 19792819 T-A Homo INTERGENIC
SBS Chr5 19792820 T-C Homo INTERGENIC
SBS Chr5 23236030 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 25797048 C-T Hetero INTERGENIC
SBS Chr6 20888105 G-C Hetero INTERGENIC
SBS Chr6 28668649 G-C Hetero INTERGENIC
SBS Chr7 36597 G-A Hetero INTERGENIC
SBS Chr7 7467742 C-T Homo INTERGENIC
SBS Chr7 8528536 G-A Hetero INTERGENIC
SBS Chr7 11437088 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g106600
SBS Chr7 12046904 G-A Hetero INTERGENIC
SBS Chr7 14630454 T-G Hetero INTERGENIC
SBS Chr7 20288400 T-G Hetero INTERGENIC
SBS Chr8 4249178 T-A Homo INTRON
SBS Chr8 5977030 G-A Hetero INTERGENIC
SBS Chr8 6701995 C-T Hetero INTERGENIC
SBS Chr8 18953961 T-A Hetero INTRON
SBS Chr9 5872231 G-A Hetero INTERGENIC
SBS Chr9 8560710 C-T Hetero INTERGENIC
SBS Chr9 13978034 C-T Hetero INTERGENIC
SBS Chr9 21348845 C-T Homo INTERGENIC
SBS Chr11 26240635 G-A Hetero INTERGENIC
SBS Chr12 2940140 G-A Hetero INTERGENIC
SBS Chr12 12188713 C-T Hetero INTERGENIC
SBS Chr12 14356673 C-A Hetero INTERGENIC
SBS Chr12 24928338 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 81589 81943 354
Deletion Chr9 95879 95880 1
Deletion Chr7 6928116 6928135 19
Deletion Chr9 6967595 6967596 1
Deletion Chr8 7127207 7127216 9
Deletion Chr3 9462949 9462951 2
Deletion Chr11 9532116 9532117 1
Deletion Chr1 10275061 10275063 2
Deletion Chr7 12045128 12045130 2
Deletion Chr4 13554657 13554658 1
Deletion Chr7 14375781 14375808 27
Deletion Chr5 17077142 17077143 1
Deletion Chr5 17081316 17081319 3
Deletion Chr5 20215785 20215786 1
Deletion Chr3 24169962 24169968 6
Deletion Chr6 26320665 26320666 1
Deletion Chr4 26470827 26470845 18
Deletion Chr4 27176124 27176125 1
Deletion Chr6 29162001 29247000 84999 14

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26950593 26950595 1
Insertion Chr2 28601052 28601055 2
Insertion Chr3 1726571 1726576 4
Insertion Chr3 2131756 2131760 3
Insertion Chr11 2450871 2450875 3 OsKitaake11g035400

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 35316399 35534434
Inversion Chr4 35316402 35534440

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 4631772 Chr3 25294671 OsKitaake11g060800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10852736	G-T	Hetero	INTERGENIC
SBS	Chr1	11821438	C-T	Hetero	INTERGENIC
SBS	Chr1	14495662	G-A	Hetero	INTRON
SBS	Chr1	20858117	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g204400
SBS	Chr1	40094368	G-C	Hetero	INTRON
SBS	Chr1	41300092	A-G	Hetero	INTERGENIC
SBS	Chr2	10968525	C-T	Hetero	INTRON
SBS	Chr2	15574445	T-A	Hetero	INTERGENIC
SBS	Chr2	15574457	G-T	Hetero	INTERGENIC
SBS	Chr2	16846093	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g171900
SBS	Chr2	24148465	T-A	Hetero	INTRON
SBS	Chr2	25516301	A-T	Hetero	INTERGENIC
SBS	Chr2	27499567	A-T	Hetero	INTRON
SBS	Chr3	3057233	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	4762464	T-C	Homo	INTERGENIC
SBS	Chr3	9595674	C-T	Homo	INTERGENIC
SBS	Chr3	15741729	G-A	Hetero	INTERGENIC
SBS	Chr3	22554360	G-T	Hetero	INTERGENIC
SBS	Chr3	23302616	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	24775229	G-A	Homo	INTERGENIC
SBS	Chr3	29194519	T-C	Hetero	INTERGENIC
SBS	Chr3	33630505	G-A	Hetero	INTERGENIC
SBS	Chr4	12078354	T-A	Homo	UTR_5_PRIME
SBS	Chr4	16321714	A-C	Homo	INTERGENIC
SBS	Chr4	22071013	A-T	Hetero	INTRON
SBS	Chr4	31811070	T-A	Hetero	INTERGENIC
SBS	Chr5	8568308	C-T	Hetero	INTERGENIC
SBS	Chr5	9736316	T-C	Hetero	INTERGENIC
SBS	Chr5	19792819	T-A	Homo	INTERGENIC
SBS	Chr5	19792820	T-C	Homo	INTERGENIC
SBS	Chr5	23236030	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	25797048	C-T	Hetero	INTERGENIC
SBS	Chr6	20888105	G-C	Hetero	INTERGENIC
SBS	Chr6	28668649	G-C	Hetero	INTERGENIC
SBS	Chr7	36597	G-A	Hetero	INTERGENIC
SBS	Chr7	7467742	C-T	Homo	INTERGENIC
SBS	Chr7	8528536	G-A	Hetero	INTERGENIC
SBS	Chr7	11437088	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g106600
SBS	Chr7	12046904	G-A	Hetero	INTERGENIC
SBS	Chr7	14630454	T-G	Hetero	INTERGENIC
SBS	Chr7	20288400	T-G	Hetero	INTERGENIC
SBS	Chr8	4249178	T-A	Homo	INTRON
SBS	Chr8	5977030	G-A	Hetero	INTERGENIC
SBS	Chr8	6701995	C-T	Hetero	INTERGENIC
SBS	Chr8	18953961	T-A	Hetero	INTRON
SBS	Chr9	5872231	G-A	Hetero	INTERGENIC
SBS	Chr9	8560710	C-T	Hetero	INTERGENIC
SBS	Chr9	13978034	C-T	Hetero	INTERGENIC
SBS	Chr9	21348845	C-T	Homo	INTERGENIC
SBS	Chr11	26240635	G-A	Hetero	INTERGENIC
SBS	Chr12	2940140	G-A	Hetero	INTERGENIC
SBS	Chr12	12188713	C-T	Hetero	INTERGENIC
SBS	Chr12	14356673	C-A	Hetero	INTERGENIC
SBS	Chr12	24928338	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	81589	81943	354
Deletion	Chr9	95879	95880	1
Deletion	Chr7	6928116	6928135	19
Deletion	Chr9	6967595	6967596	1
Deletion	Chr8	7127207	7127216	9
Deletion	Chr3	9462949	9462951	2
Deletion	Chr11	9532116	9532117	1
Deletion	Chr1	10275061	10275063	2
Deletion	Chr7	12045128	12045130	2
Deletion	Chr4	13554657	13554658	1
Deletion	Chr7	14375781	14375808	27
Deletion	Chr5	17077142	17077143	1
Deletion	Chr5	17081316	17081319	3
Deletion	Chr5	20215785	20215786	1
Deletion	Chr3	24169962	24169968	6
Deletion	Chr6	26320665	26320666	1
Deletion	Chr4	26470827	26470845	18
Deletion	Chr4	27176124	27176125	1
Deletion	Chr6	29162001	29247000	84999	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	35316399	35534434
Inversion	Chr4	35316402	35534440

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes