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| Mutant Information |
|---|
| Mutant Name | FN3850-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3850-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17337832 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 26719378 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3759407 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19911317 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 19168250 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 5819554 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9200655 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 27173650 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29092720 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 26718303 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 854435 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 4784813 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 5588082 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7405828 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10150886 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17500723 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 23733870 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 8282385 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 16079079 | T-G | Hetero | INTRON | |
| SBS | Chr12 | 17946296 | T-C | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 52182 | 52184 | 2 | |
| Deletion | Chr10 | 953455 | 953462 | 7 | |
| Deletion | Chr1 | 1125994 | 1125995 | 1 | |
| Deletion | Chr1 | 2041474 | 2041490 | 16 | OsKitaake01g025500 |
| Deletion | Chr5 | 4329001 | 4342000 | 12999 | OsKitaake05g050300 |
| Deletion | Chr2 | 6946094 | 6946097 | 3 | |
| Deletion | Chr5 | 7705134 | 7705143 | 9 | |
| Deletion | Chr5 | 9165667 | 9165674 | 7 | |
| Deletion | Chr5 | 9240644 | 9240647 | 3 | |
| Deletion | Chr4 | 9350426 | 9350430 | 4 | |
| Deletion | Chr5 | 10331460 | 10331468 | 8 | |
| Deletion | Chr8 | 10454311 | 10454322 | 11 | |
| Deletion | Chr9 | 12424314 | 12424316 | 2 | |
| Deletion | Chr4 | 18310407 | 18310429 | 22 | |
| Deletion | Chr11 | 19308412 | 19308415 | 3 | |
| Deletion | Chr10 | 19479090 | 19479096 | 6 | |
| Deletion | Chr4 | 30540499 | 30540501 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 2334934 | 2334937 | 2 | |
| Insertion | Chr10 | 18583990 | 18583994 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4342042 | 4615227 | OsKitaake05g050300 |
| Inversion | Chr5 | 4360131 | 4615226 | |
| Inversion | Chr5 | 4360135 | 4810186 | |
| Inversion | Chr11 | 11244507 | 11762904 | OsKitaake11g110200 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 20619115 | Chr5 | 7628540 |