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Mutant Information

Mutant Name	FN3851-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3851-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 71

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1058004 T-C Hetero INTRON
SBS Chr1 1611912 G-A Hetero INTERGENIC
SBS Chr1 21411894 G-A Hetero INTERGENIC
SBS Chr1 34967187 G-A Homo INTERGENIC
SBS Chr1 40986176 C-T Hetero INTERGENIC
SBS Chr2 9010837 G-A Hetero INTERGENIC
SBS Chr2 28351886 C-T Hetero INTERGENIC
SBS Chr2 31159737 C-A Homo INTERGENIC
SBS Chr3 3879525 C-A Hetero INTERGENIC
SBS Chr3 4703931 G-A Hetero INTERGENIC
SBS Chr3 5633512 C-A Hetero INTRON
SBS Chr3 7322036 T-A Hetero INTERGENIC
SBS Chr3 24673131 A-G Hetero INTERGENIC
SBS Chr3 33529961 G-C Homo INTRON
SBS Chr3 34527587 A-T Hetero INTRON
SBS Chr3 35369970 C-T Homo INTERGENIC
SBS Chr4 8903387 G-C Hetero INTERGENIC
SBS Chr4 10166237 C-T Hetero INTERGENIC
SBS Chr4 14712705 C-T Hetero INTERGENIC
SBS Chr4 23191501 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g141400
SBS Chr4 33999867 T-C Hetero INTRON
SBS Chr4 36614863 C-T Hetero INTERGENIC
SBS Chr5 5021436 C-T Hetero INTERGENIC
SBS Chr5 8009647 C-T Hetero INTERGENIC
SBS Chr5 14132237 G-A Homo INTERGENIC
SBS Chr5 24553515 G-A Hetero INTERGENIC
SBS Chr5 24945423 C-T Hetero INTERGENIC
SBS Chr6 4400458 A-G Hetero INTERGENIC
SBS Chr6 7355474 A-G Homo INTERGENIC
SBS Chr6 11768271 A-T Hetero INTRON
SBS Chr6 24339812 A-C Homo INTERGENIC
SBS Chr6 24489602 T-A Homo SYNONYMOUS_CODING
SBS Chr6 24489611 G-A Homo SYNONYMOUS_CODING
SBS Chr6 24489612 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g216400
SBS Chr6 26830358 G-A Homo INTERGENIC
SBS Chr7 10839275 T-C Homo INTERGENIC
SBS Chr7 16769627 A-C Homo INTERGENIC
SBS Chr7 22883880 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g196900
SBS Chr7 24078916 T-C Hetero UTR_3_PRIME
SBS Chr7 28369743 G-C Hetero INTERGENIC
SBS Chr7 28514254 G-C Hetero INTERGENIC
SBS Chr8 10415571 A-G Hetero INTERGENIC
SBS Chr8 14472831 A-T Hetero INTERGENIC
SBS Chr8 18178066 G-A Hetero INTERGENIC
SBS Chr8 19624877 T-C Hetero INTRON
SBS Chr8 23056626 C-T Hetero INTRON
SBS Chr8 23934561 A-G Hetero INTERGENIC
SBS Chr8 27188842 G-A Hetero INTRON
SBS Chr8 27188844 C-A Hetero INTRON
SBS Chr9 6698410 G-A Hetero INTERGENIC
SBS Chr9 9861587 C-G Hetero INTERGENIC
SBS Chr9 11232406 C-T Hetero INTERGENIC
SBS Chr9 15842990 G-A Hetero INTERGENIC
SBS Chr9 16484089 G-A Hetero INTRON
SBS Chr9 16484100 T-A Hetero INTRON
SBS Chr10 9134411 G-A Hetero INTERGENIC
SBS Chr10 11118467 A-G Hetero INTERGENIC
SBS Chr11 401650 A-G Hetero SYNONYMOUS_CODING
SBS Chr11 3772206 T-G Homo INTERGENIC
SBS Chr11 12944464 A-C Hetero INTERGENIC
SBS Chr11 14140969 G-C Hetero INTERGENIC
SBS Chr11 14547641 C-G Hetero INTRON
SBS Chr11 15259862 G-A Hetero INTERGENIC
SBS Chr11 18997609 G-A Hetero INTERGENIC
SBS Chr11 28646477 A-C Homo INTERGENIC
SBS Chr11 28894550 C-T Hetero UTR_3_PRIME
SBS Chr12 2090659 T-C Hetero INTERGENIC
SBS Chr12 13400517 A-T Hetero INTERGENIC
SBS Chr12 15345091 T-C Hetero INTERGENIC
SBS Chr12 21131829 C-A Hetero INTRON
SBS Chr12 26359013 T-G Hetero INTRON

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 107211 107212 1
Deletion Chr9 488393 488401 8
Deletion Chr12 2747001 3117000 369999 43
Deletion Chr11 4718944 4718956 12
Deletion Chr8 6556001 6688000 131999 OsKitaake08g069000
Deletion Chr8 6708001 6757000 48999 OsKitaake08g069707
Deletion Chr9 9668001 9725000 56999 3
Deletion Chr5 9687878 9687881 3
Deletion Chr9 11577191 11577194 3
Deletion Chr3 15849381 15849385 4
Deletion Chr10 18236812 18236818 6
Deletion Chr8 18521010 18521016 6
Deletion Chr10 22566891 22566892 1
Deletion Chr11 25082035 25082041 6
Deletion Chr11 25248001 25254000 5999
Deletion Chr6 26860014 26860016 2
Deletion Chr4 29956373 29956374 1
Deletion Chr1 41839340 41839344 4 OsKitaake01g457800
Deletion Chr1 41841639 41841651 12 OsKitaake01g457900
Deletion Chr1 41992515 41992526 11 OsKitaake01g460750
Deletion Chr1 42060001 42099000 38999 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2937847 2937849 1
Insertion Chr4 27640601 27640604 2
Insertion Chr6 5827304 5827306 1
Insertion Chr7 17026681 17026684 2
Insertion Chr9 12356754 12356759 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 25220137 25254677 OsKitaake11g203065

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 4406958 Chr3 11237759 OsKitaake03g154400
Translocation Chr6 4406959 Chr3 11238537 OsKitaake03g154400
Translocation Chr6 11480872 Chr3 8853958 2
Translocation Chr8 20985658 Chr3 11243632 2
Translocation Chr8 20985669 Chr3 11238544 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1058004	T-C	Hetero	INTRON
SBS	Chr1	1611912	G-A	Hetero	INTERGENIC
SBS	Chr1	21411894	G-A	Hetero	INTERGENIC
SBS	Chr1	34967187	G-A	Homo	INTERGENIC
SBS	Chr1	40986176	C-T	Hetero	INTERGENIC
SBS	Chr2	9010837	G-A	Hetero	INTERGENIC
SBS	Chr2	28351886	C-T	Hetero	INTERGENIC
SBS	Chr2	31159737	C-A	Homo	INTERGENIC
SBS	Chr3	3879525	C-A	Hetero	INTERGENIC
SBS	Chr3	4703931	G-A	Hetero	INTERGENIC
SBS	Chr3	5633512	C-A	Hetero	INTRON
SBS	Chr3	7322036	T-A	Hetero	INTERGENIC
SBS	Chr3	24673131	A-G	Hetero	INTERGENIC
SBS	Chr3	33529961	G-C	Homo	INTRON
SBS	Chr3	34527587	A-T	Hetero	INTRON
SBS	Chr3	35369970	C-T	Homo	INTERGENIC
SBS	Chr4	8903387	G-C	Hetero	INTERGENIC
SBS	Chr4	10166237	C-T	Hetero	INTERGENIC
SBS	Chr4	14712705	C-T	Hetero	INTERGENIC
SBS	Chr4	23191501	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g141400
SBS	Chr4	33999867	T-C	Hetero	INTRON
SBS	Chr4	36614863	C-T	Hetero	INTERGENIC
SBS	Chr5	5021436	C-T	Hetero	INTERGENIC
SBS	Chr5	8009647	C-T	Hetero	INTERGENIC
SBS	Chr5	14132237	G-A	Homo	INTERGENIC
SBS	Chr5	24553515	G-A	Hetero	INTERGENIC
SBS	Chr5	24945423	C-T	Hetero	INTERGENIC
SBS	Chr6	4400458	A-G	Hetero	INTERGENIC
SBS	Chr6	7355474	A-G	Homo	INTERGENIC
SBS	Chr6	11768271	A-T	Hetero	INTRON
SBS	Chr6	24339812	A-C	Homo	INTERGENIC
SBS	Chr6	24489602	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	24489611	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	24489612	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g216400
SBS	Chr6	26830358	G-A	Homo	INTERGENIC
SBS	Chr7	10839275	T-C	Homo	INTERGENIC
SBS	Chr7	16769627	A-C	Homo	INTERGENIC
SBS	Chr7	22883880	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g196900
SBS	Chr7	24078916	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	28369743	G-C	Hetero	INTERGENIC
SBS	Chr7	28514254	G-C	Hetero	INTERGENIC
SBS	Chr8	10415571	A-G	Hetero	INTERGENIC
SBS	Chr8	14472831	A-T	Hetero	INTERGENIC
SBS	Chr8	18178066	G-A	Hetero	INTERGENIC
SBS	Chr8	19624877	T-C	Hetero	INTRON
SBS	Chr8	23056626	C-T	Hetero	INTRON
SBS	Chr8	23934561	A-G	Hetero	INTERGENIC
SBS	Chr8	27188842	G-A	Hetero	INTRON
SBS	Chr8	27188844	C-A	Hetero	INTRON
SBS	Chr9	6698410	G-A	Hetero	INTERGENIC
SBS	Chr9	9861587	C-G	Hetero	INTERGENIC
SBS	Chr9	11232406	C-T	Hetero	INTERGENIC
SBS	Chr9	15842990	G-A	Hetero	INTERGENIC
SBS	Chr9	16484089	G-A	Hetero	INTRON
SBS	Chr9	16484100	T-A	Hetero	INTRON
SBS	Chr10	9134411	G-A	Hetero	INTERGENIC
SBS	Chr10	11118467	A-G	Hetero	INTERGENIC
SBS	Chr11	401650	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	3772206	T-G	Homo	INTERGENIC
SBS	Chr11	12944464	A-C	Hetero	INTERGENIC
SBS	Chr11	14140969	G-C	Hetero	INTERGENIC
SBS	Chr11	14547641	C-G	Hetero	INTRON
SBS	Chr11	15259862	G-A	Hetero	INTERGENIC
SBS	Chr11	18997609	G-A	Hetero	INTERGENIC
SBS	Chr11	28646477	A-C	Homo	INTERGENIC
SBS	Chr11	28894550	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	2090659	T-C	Hetero	INTERGENIC
SBS	Chr12	13400517	A-T	Hetero	INTERGENIC
SBS	Chr12	15345091	T-C	Hetero	INTERGENIC
SBS	Chr12	21131829	C-A	Hetero	INTRON
SBS	Chr12	26359013	T-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	107211	107212	1
Deletion	Chr9	488393	488401	8
Deletion	Chr12	2747001	3117000	369999	43
Deletion	Chr11	4718944	4718956	12
Deletion	Chr8	6556001	6688000	131999	OsKitaake08g069000
Deletion	Chr8	6708001	6757000	48999	OsKitaake08g069707
Deletion	Chr9	9668001	9725000	56999	3
Deletion	Chr5	9687878	9687881	3
Deletion	Chr9	11577191	11577194	3
Deletion	Chr3	15849381	15849385	4
Deletion	Chr10	18236812	18236818	6
Deletion	Chr8	18521010	18521016	6
Deletion	Chr10	22566891	22566892	1
Deletion	Chr11	25082035	25082041	6
Deletion	Chr11	25248001	25254000	5999
Deletion	Chr6	26860014	26860016	2
Deletion	Chr4	29956373	29956374	1
Deletion	Chr1	41839340	41839344	4	OsKitaake01g457800
Deletion	Chr1	41841639	41841651	12	OsKitaake01g457900
Deletion	Chr1	41992515	41992526	11	OsKitaake01g460750
Deletion	Chr1	42060001	42099000	38999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	25220137	25254677	OsKitaake11g203065

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes