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Mutant Information

Mutant Name	FN3852-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3852-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3597549 G-T Hetero INTRON
SBS Chr1 13094203 T-C Homo INTERGENIC
SBS Chr1 23580166 G-A Hetero INTERGENIC
SBS Chr1 34820559 T-C Hetero INTERGENIC
SBS Chr2 1210763 A-G Homo INTERGENIC
SBS Chr2 13153512 C-T Hetero INTERGENIC
SBS Chr2 13661681 T-C Hetero INTERGENIC
SBS Chr2 20956347 A-G Hetero INTRON
SBS Chr2 36199677 T-C Hetero INTERGENIC
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 9674864 C-T Homo INTRON
SBS Chr3 11689119 C-A Hetero UTR_3_PRIME
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr3 20000093 T-A Homo INTRON
SBS Chr3 20224377 G-A Hetero INTERGENIC
SBS Chr3 27744929 G-A Hetero UTR_5_PRIME
SBS Chr3 28532116 G-A Hetero INTERGENIC
SBS Chr3 33473093 G-A Hetero INTERGENIC
SBS Chr4 102557 T-C Hetero INTERGENIC
SBS Chr4 603314 C-T Hetero INTERGENIC
SBS Chr4 1409228 T-A Hetero INTERGENIC
SBS Chr4 11860533 G-A Hetero INTERGENIC
SBS Chr5 1193286 A-C Homo INTERGENIC
SBS Chr5 18583574 C-T Homo INTERGENIC
SBS Chr5 24569638 C-A Homo INTERGENIC
SBS Chr6 936683 C-T Homo INTERGENIC
SBS Chr6 12856739 C-T Hetero INTRON
SBS Chr6 15217642 T-C Hetero INTERGENIC
SBS Chr6 29199283 T-G Hetero INTERGENIC
SBS Chr7 4780390 C-A Hetero INTERGENIC
SBS Chr7 8292115 T-C Hetero INTERGENIC
SBS Chr7 11767484 C-T Hetero INTERGENIC
SBS Chr7 14868193 A-T Hetero INTERGENIC
SBS Chr7 14868194 C-A Hetero INTERGENIC
SBS Chr8 1523321 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 12063250 C-T Hetero INTERGENIC
SBS Chr9 1528994 C-T Hetero INTERGENIC
SBS Chr9 1806661 G-T Homo INTERGENIC
SBS Chr9 16626180 G-A Hetero INTERGENIC
SBS Chr10 2324824 C-A Hetero INTRON
SBS Chr10 9126639 G-A Hetero INTERGENIC
SBS Chr10 17394958 C-T Hetero INTERGENIC
SBS Chr11 8893267 C-T Homo INTERGENIC
SBS Chr11 15417415 C-G Hetero INTERGENIC
SBS Chr11 24807073 T-A Homo INTERGENIC
SBS Chr11 27739716 A-G Hetero INTERGENIC
SBS Chr12 3682725 T-C Hetero INTRON
SBS Chr12 5965833 G-C Homo INTERGENIC
SBS Chr12 12212068 C-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1859634 1859637 3
Deletion Chr10 5269001 5529000 259999 9
Deletion Chr9 7193770 7193774 4
Deletion Chr8 18577460 18577474 14
Deletion Chr7 18906381 18906383 2
Deletion Chr4 20202830 20202832 2
Deletion Chr12 21057833 21057835 2
Deletion Chr4 22067001 22208000 140999 10
Deletion Chr10 23800863 23800872 9
Deletion Chr7 25288572 25288580 8
Deletion Chr8 29165053 29165055 2
Deletion Chr4 29636507 29636508 1
Deletion Chr2 34669583 34669588 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35509979 35509984 4
Insertion Chr3 8143087 8143090 2
Insertion Chr6 5878477 5878480 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 21491234 22456824 OsKitaake04g120800
Inversion Chr4 22090089 22206438

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 22456804 Chr3 17431217

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3597549	G-T	Hetero	INTRON
SBS	Chr1	13094203	T-C	Homo	INTERGENIC
SBS	Chr1	23580166	G-A	Hetero	INTERGENIC
SBS	Chr1	34820559	T-C	Hetero	INTERGENIC
SBS	Chr2	1210763	A-G	Homo	INTERGENIC
SBS	Chr2	13153512	C-T	Hetero	INTERGENIC
SBS	Chr2	13661681	T-C	Hetero	INTERGENIC
SBS	Chr2	20956347	A-G	Hetero	INTRON
SBS	Chr2	36199677	T-C	Hetero	INTERGENIC
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	9674864	C-T	Homo	INTRON
SBS	Chr3	11689119	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr3	20000093	T-A	Homo	INTRON
SBS	Chr3	20224377	G-A	Hetero	INTERGENIC
SBS	Chr3	27744929	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	28532116	G-A	Hetero	INTERGENIC
SBS	Chr3	33473093	G-A	Hetero	INTERGENIC
SBS	Chr4	102557	T-C	Hetero	INTERGENIC
SBS	Chr4	603314	C-T	Hetero	INTERGENIC
SBS	Chr4	1409228	T-A	Hetero	INTERGENIC
SBS	Chr4	11860533	G-A	Hetero	INTERGENIC
SBS	Chr5	1193286	A-C	Homo	INTERGENIC
SBS	Chr5	18583574	C-T	Homo	INTERGENIC
SBS	Chr5	24569638	C-A	Homo	INTERGENIC
SBS	Chr6	936683	C-T	Homo	INTERGENIC
SBS	Chr6	12856739	C-T	Hetero	INTRON
SBS	Chr6	15217642	T-C	Hetero	INTERGENIC
SBS	Chr6	29199283	T-G	Hetero	INTERGENIC
SBS	Chr7	4780390	C-A	Hetero	INTERGENIC
SBS	Chr7	8292115	T-C	Hetero	INTERGENIC
SBS	Chr7	11767484	C-T	Hetero	INTERGENIC
SBS	Chr7	14868193	A-T	Hetero	INTERGENIC
SBS	Chr7	14868194	C-A	Hetero	INTERGENIC
SBS	Chr8	1523321	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	12063250	C-T	Hetero	INTERGENIC
SBS	Chr9	1528994	C-T	Hetero	INTERGENIC
SBS	Chr9	1806661	G-T	Homo	INTERGENIC
SBS	Chr9	16626180	G-A	Hetero	INTERGENIC
SBS	Chr10	2324824	C-A	Hetero	INTRON
SBS	Chr10	9126639	G-A	Hetero	INTERGENIC
SBS	Chr10	17394958	C-T	Hetero	INTERGENIC
SBS	Chr11	8893267	C-T	Homo	INTERGENIC
SBS	Chr11	15417415	C-G	Hetero	INTERGENIC
SBS	Chr11	24807073	T-A	Homo	INTERGENIC
SBS	Chr11	27739716	A-G	Hetero	INTERGENIC
SBS	Chr12	3682725	T-C	Hetero	INTRON
SBS	Chr12	5965833	G-C	Homo	INTERGENIC
SBS	Chr12	12212068	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1859634	1859637	3
Deletion	Chr10	5269001	5529000	259999	9
Deletion	Chr9	7193770	7193774	4
Deletion	Chr8	18577460	18577474	14
Deletion	Chr7	18906381	18906383	2
Deletion	Chr4	20202830	20202832	2
Deletion	Chr12	21057833	21057835	2
Deletion	Chr4	22067001	22208000	140999	10
Deletion	Chr10	23800863	23800872	9
Deletion	Chr7	25288572	25288580	8
Deletion	Chr8	29165053	29165055	2
Deletion	Chr4	29636507	29636508	1
Deletion	Chr2	34669583	34669588	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	21491234	22456824	OsKitaake04g120800
Inversion	Chr4	22090089	22206438

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes