Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3853-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3853-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10751043 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 25032425 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 6578937 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 22512569 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29185244 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 371229 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g005400 |
| SBS | Chr5 | 7526337 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 9930119 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g089601 |
| SBS | Chr5 | 13500427 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 23491597 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 24521101 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 12925039 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16350841 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18067073 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18886233 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 25140661 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 25770964 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 1476251 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 4457207 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g055900 |
| SBS | Chr7 | 8242188 | G-A | Homo | INTRON | |
| SBS | Chr7 | 8349770 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g090850 |
| SBS | Chr7 | 16013283 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 6155696 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18154192 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 19780872 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29018192 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 5500097 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 17499063 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1123212 | 1123217 | 5 | |
| Deletion | Chr6 | 4165020 | 4165034 | 14 | |
| Deletion | Chr7 | 6381620 | 6381627 | 7 | |
| Deletion | Chr4 | 8292745 | 8292750 | 5 | |
| Deletion | Chr1 | 8573333 | 8573336 | 3 | |
| Deletion | Chr8 | 14078502 | 14078503 | 1 | |
| Deletion | Chr3 | 14924474 | 14924482 | 8 | |
| Deletion | Chr5 | 23527231 | 23527233 | 2 | |
| Deletion | Chr2 | 27112631 | 27112636 | 5 | OsKitaake02g270800 |
| Deletion | Chr7 | 27454717 | 27454718 | 1 | |
| Deletion | Chr4 | 34990749 | 34990756 | 7 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 10266529 | 10266532 | 2 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 9242686 | 9252437 | OsKitaake06g110300 |
| Inversion | Chr6 | 9242694 | 9253576 | OsKitaake06g110300 |
| Inversion | Chr6 | 16232617 | 16415553 | |
| Inversion | Chr7 | 19869305 | 19899613 | |
| Inversion | Chr7 | 23408051 | 23760184 | |
| Inversion | Chr7 | 23408065 | 23760188 | OsKitaake07g204700 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 933799 | Chr5 | 4456341 | |
| Translocation | Chr6 | 16121722 | Chr5 | 20588844 | OsKitaake06g154900 |
| Translocation | Chr6 | 16122502 | Chr5 | 20592283 | 2 |