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Mutant Information

Mutant Name	FN3854-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3854-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10518937 G-A Hetero INTERGENIC
SBS Chr1 12280128 C-T Hetero INTERGENIC
SBS Chr1 13560583 G-A Hetero INTERGENIC
SBS Chr1 33237772 A-G Homo INTERGENIC
SBS Chr1 34577766 C-A Hetero INTERGENIC
SBS Chr2 22066315 G-C Hetero INTRON
SBS Chr2 23381730 G-A Hetero INTERGENIC
SBS Chr2 23769389 G-A Hetero INTERGENIC
SBS Chr2 30538179 T-G Hetero INTERGENIC
SBS Chr3 5935123 G-C Homo INTRON
SBS Chr3 25576037 G-T Hetero INTRON
SBS Chr3 27408092 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g282900
SBS Chr3 27713189 C-T Hetero INTERGENIC
SBS Chr3 28552287 C-A Hetero UTR_5_PRIME
SBS Chr3 28552288 C-A Hetero UTR_5_PRIME
SBS Chr3 31681315 G-A Hetero INTERGENIC
SBS Chr3 32741489 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g347300
SBS Chr3 32741491 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g347300
SBS Chr4 15329331 T-C Hetero INTERGENIC
SBS Chr4 15536285 C-A Hetero INTERGENIC
SBS Chr4 22242221 A-G Hetero INTERGENIC
SBS Chr5 3638046 A-C Hetero INTERGENIC
SBS Chr5 6100670 T-C Homo INTERGENIC
SBS Chr5 11357466 A-C Hetero INTERGENIC
SBS Chr5 15542985 G-A Homo INTERGENIC
SBS Chr5 16743826 C-A Homo INTERGENIC
SBS Chr6 1636023 A-T Homo INTERGENIC
SBS Chr6 1699014 T-A Homo INTERGENIC
SBS Chr6 8811998 T-G Homo INTERGENIC
SBS Chr7 2026626 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g027700
SBS Chr7 6468289 C-T Hetero INTERGENIC
SBS Chr7 11470743 T-C Hetero INTERGENIC
SBS Chr7 11569929 A-G Hetero INTERGENIC
SBS Chr7 13060807 G-C Hetero INTERGENIC
SBS Chr7 13885545 C-A Hetero INTERGENIC
SBS Chr8 1712177 C-T Hetero INTERGENIC
SBS Chr8 8900840 T-G Hetero INTRON
SBS Chr8 11917234 C-T Hetero INTERGENIC
SBS Chr8 13035245 G-A Hetero INTERGENIC
SBS Chr8 17655349 G-A Hetero INTERGENIC
SBS Chr8 20910042 C-A Hetero INTRON
SBS Chr9 8116965 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 845221 G-A Hetero INTERGENIC
SBS Chr11 3534255 G-A Hetero INTRON
SBS Chr11 8507014 C-T Hetero INTERGENIC
SBS Chr11 8632879 T-G Hetero INTERGENIC
SBS Chr11 10295790 C-T Hetero INTERGENIC
SBS Chr11 13051557 A-G Hetero INTERGENIC
SBS Chr11 14258742 C-G Hetero INTERGENIC
SBS Chr12 15473744 C-A Hetero INTERGENIC
SBS Chr12 16866923 A-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4847001 4878000 30999 5
Deletion Chr2 7662743 7662745 2
Deletion Chr1 14651001 14708000 56999 4
Deletion Chr6 14816260 14816262 2
Deletion Chr1 22195275 22195278 3
Deletion Chr7 23511170 23511188 18
Deletion Chr8 23938535 23938538 3
Deletion Chr4 24648705 24648706 1
Deletion Chr4 25104893 25104896 3
Deletion Chr2 34236483 34236485 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18550267 18550270 2
Insertion Chr3 16706469 16706471 1
Insertion Chr7 11010598 11010601 2
Insertion Chr2 20834599 20834602 2
Insertion Chr5 30226359 30226361 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 4847244 4954214
Inversion Chr2 4874955 5447527
Inversion Chr1 30306319 30889278 OsKitaake01g307000

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 4552580 Chr1 30306326
Translocation Chr4 6996460 Chr2 4862412 OsKitaake04g035500
Translocation Chr4 6996545 Chr2 4865547 OsKitaake04g035500
Translocation Chr12 26818297 Chr2 4884602 OsKitaake02g067500
Translocation Chr12 26819101 Chr2 4845770
Translocation Chr12 26819616 Chr2 5447434

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10518937	G-A	Hetero	INTERGENIC
SBS	Chr1	12280128	C-T	Hetero	INTERGENIC
SBS	Chr1	13560583	G-A	Hetero	INTERGENIC
SBS	Chr1	33237772	A-G	Homo	INTERGENIC
SBS	Chr1	34577766	C-A	Hetero	INTERGENIC
SBS	Chr2	22066315	G-C	Hetero	INTRON
SBS	Chr2	23381730	G-A	Hetero	INTERGENIC
SBS	Chr2	23769389	G-A	Hetero	INTERGENIC
SBS	Chr2	30538179	T-G	Hetero	INTERGENIC
SBS	Chr3	5935123	G-C	Homo	INTRON
SBS	Chr3	25576037	G-T	Hetero	INTRON
SBS	Chr3	27408092	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g282900
SBS	Chr3	27713189	C-T	Hetero	INTERGENIC
SBS	Chr3	28552287	C-A	Hetero	UTR_5_PRIME
SBS	Chr3	28552288	C-A	Hetero	UTR_5_PRIME
SBS	Chr3	31681315	G-A	Hetero	INTERGENIC
SBS	Chr3	32741489	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g347300
SBS	Chr3	32741491	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g347300
SBS	Chr4	15329331	T-C	Hetero	INTERGENIC
SBS	Chr4	15536285	C-A	Hetero	INTERGENIC
SBS	Chr4	22242221	A-G	Hetero	INTERGENIC
SBS	Chr5	3638046	A-C	Hetero	INTERGENIC
SBS	Chr5	6100670	T-C	Homo	INTERGENIC
SBS	Chr5	11357466	A-C	Hetero	INTERGENIC
SBS	Chr5	15542985	G-A	Homo	INTERGENIC
SBS	Chr5	16743826	C-A	Homo	INTERGENIC
SBS	Chr6	1636023	A-T	Homo	INTERGENIC
SBS	Chr6	1699014	T-A	Homo	INTERGENIC
SBS	Chr6	8811998	T-G	Homo	INTERGENIC
SBS	Chr7	2026626	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g027700
SBS	Chr7	6468289	C-T	Hetero	INTERGENIC
SBS	Chr7	11470743	T-C	Hetero	INTERGENIC
SBS	Chr7	11569929	A-G	Hetero	INTERGENIC
SBS	Chr7	13060807	G-C	Hetero	INTERGENIC
SBS	Chr7	13885545	C-A	Hetero	INTERGENIC
SBS	Chr8	1712177	C-T	Hetero	INTERGENIC
SBS	Chr8	8900840	T-G	Hetero	INTRON
SBS	Chr8	11917234	C-T	Hetero	INTERGENIC
SBS	Chr8	13035245	G-A	Hetero	INTERGENIC
SBS	Chr8	17655349	G-A	Hetero	INTERGENIC
SBS	Chr8	20910042	C-A	Hetero	INTRON
SBS	Chr9	8116965	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	845221	G-A	Hetero	INTERGENIC
SBS	Chr11	3534255	G-A	Hetero	INTRON
SBS	Chr11	8507014	C-T	Hetero	INTERGENIC
SBS	Chr11	8632879	T-G	Hetero	INTERGENIC
SBS	Chr11	10295790	C-T	Hetero	INTERGENIC
SBS	Chr11	13051557	A-G	Hetero	INTERGENIC
SBS	Chr11	14258742	C-G	Hetero	INTERGENIC
SBS	Chr12	15473744	C-A	Hetero	INTERGENIC
SBS	Chr12	16866923	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4847001	4878000	30999	5
Deletion	Chr2	7662743	7662745	2
Deletion	Chr1	14651001	14708000	56999	4
Deletion	Chr6	14816260	14816262	2
Deletion	Chr1	22195275	22195278	3
Deletion	Chr7	23511170	23511188	18
Deletion	Chr8	23938535	23938538	3
Deletion	Chr4	24648705	24648706	1
Deletion	Chr4	25104893	25104896	3
Deletion	Chr2	34236483	34236485	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4847244	4954214
Inversion	Chr2	4874955	5447527
Inversion	Chr1	30306319	30889278	OsKitaake01g307000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes