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Mutant Information

Mutant Name	FN3855-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3855-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12569150 A-G Hetero INTERGENIC
SBS Chr1 26293243 G-A Hetero INTERGENIC
SBS Chr1 38383341 T-C Hetero INTERGENIC
SBS Chr2 8434983 C-T Hetero INTERGENIC
SBS Chr2 17238768 C-T Homo INTERGENIC
SBS Chr3 23183340 C-T Hetero INTERGENIC
SBS Chr3 32493969 G-A Hetero INTERGENIC
SBS Chr4 6327726 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g031700
SBS Chr4 13261484 T-A Homo INTERGENIC
SBS Chr4 28700617 C-T Hetero INTERGENIC
SBS Chr5 317964 A-T Hetero INTRON
SBS Chr5 10152928 C-A Hetero INTERGENIC
SBS Chr6 14613426 G-A Homo INTERGENIC
SBS Chr6 15211368 C-T Homo INTERGENIC
SBS Chr6 17041807 T-C Hetero INTERGENIC
SBS Chr6 19947167 G-A Homo INTERGENIC
SBS Chr6 20256944 T-C Hetero INTERGENIC
SBS Chr7 7403847 C-A Hetero INTERGENIC
SBS Chr7 16116129 A-T Hetero INTERGENIC
SBS Chr8 1467477 C-T Hetero INTERGENIC
SBS Chr8 5595341 T-C Hetero INTERGENIC
SBS Chr8 10719206 C-T Hetero INTERGENIC
SBS Chr8 10744540 C-G Hetero INTERGENIC
SBS Chr8 12326148 T-C Hetero INTERGENIC
SBS Chr8 21969120 G-T Hetero INTERGENIC
SBS Chr9 14756633 T-A Hetero INTERGENIC
SBS Chr10 18678523 G-T Hetero INTERGENIC
SBS Chr10 22531772 C-T Homo INTRON
SBS Chr11 10165078 G-A Hetero INTERGENIC
SBS Chr11 16631700 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1249061 1249062 1
Deletion Chr9 1651290 1651293 3
Deletion Chr10 5676847 5676851 4
Deletion Chr1 9941723 9941730 7
Deletion Chr6 10299989 10299995 6
Deletion Chr1 12506746 12506755 9
Deletion Chr4 13192567 13192569 2
Deletion Chr4 13853939 13853941 2
Deletion Chr11 15528920 15528928 8
Deletion Chr2 16452001 16465000 12999
Deletion Chr2 16669001 16702000 32999 3
Deletion Chr10 16831349 16831352 3
Deletion Chr2 17251001 17262000 10999 2
Deletion Chr8 20605130 20605147 17
Deletion Chr10 21475426 21475437 11
Deletion Chr9 21527001 21538000 10999 OsKitaake09g188450
Deletion Chr7 22951296 22951300 4
Deletion Chr6 25826915 25826922 7
Deletion Chr3 36947851 36947852 1
Deletion Chr1 39660197 39660205 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16647037 16647040 2
Insertion Chr10 11505560 11505562 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 13275115 13275878
Inversion Chr7 13275121 13275881
Inversion Chr2 16464962 17261761 OsKitaake02g173800
Inversion Chr2 16674890 17250851
Inversion Chr2 30844959 30893179 OsKitaake02g315100
Inversion Chr2 30844969 30893194 OsKitaake02g315100
Inversion Chr3 32276785 32309380

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 7963981 Chr6 11456616
Translocation Chr8 7964017 Chr6 11455452
Translocation Chr10 14564393 Chr2 16699256 OsKitaake10g091300
Translocation Chr10 14564395 Chr2 16679029 2
Translocation Chr12 24491818 Chr9 21527129 2
Translocation Chr12 24491828 Chr9 21522247 OsKitaake12g197500
Translocation Chr3 25312221 Chr2 16679304 OsKitaake02g170900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12569150	A-G	Hetero	INTERGENIC
SBS	Chr1	26293243	G-A	Hetero	INTERGENIC
SBS	Chr1	38383341	T-C	Hetero	INTERGENIC
SBS	Chr2	8434983	C-T	Hetero	INTERGENIC
SBS	Chr2	17238768	C-T	Homo	INTERGENIC
SBS	Chr3	23183340	C-T	Hetero	INTERGENIC
SBS	Chr3	32493969	G-A	Hetero	INTERGENIC
SBS	Chr4	6327726	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g031700
SBS	Chr4	13261484	T-A	Homo	INTERGENIC
SBS	Chr4	28700617	C-T	Hetero	INTERGENIC
SBS	Chr5	317964	A-T	Hetero	INTRON
SBS	Chr5	10152928	C-A	Hetero	INTERGENIC
SBS	Chr6	14613426	G-A	Homo	INTERGENIC
SBS	Chr6	15211368	C-T	Homo	INTERGENIC
SBS	Chr6	17041807	T-C	Hetero	INTERGENIC
SBS	Chr6	19947167	G-A	Homo	INTERGENIC
SBS	Chr6	20256944	T-C	Hetero	INTERGENIC
SBS	Chr7	7403847	C-A	Hetero	INTERGENIC
SBS	Chr7	16116129	A-T	Hetero	INTERGENIC
SBS	Chr8	1467477	C-T	Hetero	INTERGENIC
SBS	Chr8	5595341	T-C	Hetero	INTERGENIC
SBS	Chr8	10719206	C-T	Hetero	INTERGENIC
SBS	Chr8	10744540	C-G	Hetero	INTERGENIC
SBS	Chr8	12326148	T-C	Hetero	INTERGENIC
SBS	Chr8	21969120	G-T	Hetero	INTERGENIC
SBS	Chr9	14756633	T-A	Hetero	INTERGENIC
SBS	Chr10	18678523	G-T	Hetero	INTERGENIC
SBS	Chr10	22531772	C-T	Homo	INTRON
SBS	Chr11	10165078	G-A	Hetero	INTERGENIC
SBS	Chr11	16631700	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1249061	1249062	1
Deletion	Chr9	1651290	1651293	3
Deletion	Chr10	5676847	5676851	4
Deletion	Chr1	9941723	9941730	7
Deletion	Chr6	10299989	10299995	6
Deletion	Chr1	12506746	12506755	9
Deletion	Chr4	13192567	13192569	2
Deletion	Chr4	13853939	13853941	2
Deletion	Chr11	15528920	15528928	8
Deletion	Chr2	16452001	16465000	12999
Deletion	Chr2	16669001	16702000	32999	3
Deletion	Chr10	16831349	16831352	3
Deletion	Chr2	17251001	17262000	10999	2
Deletion	Chr8	20605130	20605147	17
Deletion	Chr10	21475426	21475437	11
Deletion	Chr9	21527001	21538000	10999	OsKitaake09g188450
Deletion	Chr7	22951296	22951300	4
Deletion	Chr6	25826915	25826922	7
Deletion	Chr3	36947851	36947852	1
Deletion	Chr1	39660197	39660205	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	13275115	13275878
Inversion	Chr7	13275121	13275881
Inversion	Chr2	16464962	17261761	OsKitaake02g173800
Inversion	Chr2	16674890	17250851
Inversion	Chr2	30844959	30893179	OsKitaake02g315100
Inversion	Chr2	30844969	30893194	OsKitaake02g315100
Inversion	Chr3	32276785	32309380

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes