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Mutant Information

Mutant Name	FN3856-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3856-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3896531 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g052200
SBS Chr1 11545808 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g140300
SBS Chr1 15033192 T-A Hetero INTRON
SBS Chr1 23584443 C-T Hetero INTERGENIC
SBS Chr1 29966956 A-G Hetero INTERGENIC
SBS Chr1 33778648 T-A Homo INTERGENIC
SBS Chr2 2507674 T-A Hetero INTERGENIC
SBS Chr2 12713986 C-T Homo INTERGENIC
SBS Chr2 32547493 A-G Hetero INTERGENIC
SBS Chr2 33872985 C-T Hetero INTERGENIC
SBS Chr2 36330085 T-C Hetero INTERGENIC
SBS Chr2 36958223 C-G Homo INTERGENIC
SBS Chr3 20522902 C-T Hetero INTERGENIC
SBS Chr3 21264418 T-C Hetero INTERGENIC
SBS Chr3 28554535 A-T Homo INTRON
SBS Chr3 34813787 A-G Hetero INTERGENIC
SBS Chr3 36345823 C-T Hetero STOP_GAINED OsKitaake03g403200
SBS Chr4 1212562 G-A Hetero INTRON
SBS Chr4 2727206 C-T Homo INTERGENIC
SBS Chr4 9369371 C-T Hetero INTERGENIC
SBS Chr4 16905023 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 20237526 C-T Hetero INTERGENIC
SBS Chr5 10314321 A-G Hetero INTERGENIC
SBS Chr5 15773181 T-G Homo INTERGENIC
SBS Chr5 17200338 C-A Homo INTERGENIC
SBS Chr5 24701449 C-T Homo INTERGENIC
SBS Chr6 9159679 G-A Hetero INTRON
SBS Chr7 25762538 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g234900
SBS Chr8 8741451 A-C Hetero INTERGENIC
SBS Chr8 17231729 G-A Hetero INTERGENIC
SBS Chr8 18374295 G-A Hetero INTERGENIC
SBS Chr8 19684613 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g144700
SBS Chr8 25615949 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g202600
SBS Chr9 13345678 A-G Hetero INTERGENIC
SBS Chr9 22667294 T-C Hetero INTERGENIC
SBS Chr9 22669253 G-T Hetero INTERGENIC
SBS Chr11 2039643 A-T Homo INTRON
SBS Chr11 8398936 C-T Hetero INTERGENIC
SBS Chr11 20508060 G-A Hetero INTERGENIC
SBS Chr11 27995786 A-G Hetero INTERGENIC
SBS Chr12 4360948 G-A Hetero INTERGENIC
SBS Chr12 9768033 C-T Hetero INTERGENIC
SBS Chr12 10806310 A-G Hetero INTERGENIC
SBS Chr12 11284314 T-C Homo INTERGENIC
SBS Chr12 18814959 T-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 934482 934484 2
Deletion Chr8 2112734 2112735 1
Deletion Chr11 2542001 3123000 580999 73
Deletion Chr7 4609196 4609200 4
Deletion Chr6 4872466 4872468 2
Deletion Chr3 8171509 8171515 6
Deletion Chr2 9639191 9639194 3
Deletion Chr10 16148001 16219000 70999 12
Deletion Chr10 16222001 16570000 347999 36
Deletion Chr9 19472131 19472134 3
Deletion Chr7 22613684 22613692 8
Deletion Chr3 24529001 24575000 45999 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 201379 201384 4
Insertion Chr4 31965684 31965686 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 16139947 16819352
Inversion Chr10 16566345 16819408

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 16147743 Chr1 20357678
Translocation Chr6 30245294 Chr1 42443169 OsKitaake06g283500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3896531	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g052200
SBS	Chr1	11545808	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g140300
SBS	Chr1	15033192	T-A	Hetero	INTRON
SBS	Chr1	23584443	C-T	Hetero	INTERGENIC
SBS	Chr1	29966956	A-G	Hetero	INTERGENIC
SBS	Chr1	33778648	T-A	Homo	INTERGENIC
SBS	Chr2	2507674	T-A	Hetero	INTERGENIC
SBS	Chr2	12713986	C-T	Homo	INTERGENIC
SBS	Chr2	32547493	A-G	Hetero	INTERGENIC
SBS	Chr2	33872985	C-T	Hetero	INTERGENIC
SBS	Chr2	36330085	T-C	Hetero	INTERGENIC
SBS	Chr2	36958223	C-G	Homo	INTERGENIC
SBS	Chr3	20522902	C-T	Hetero	INTERGENIC
SBS	Chr3	21264418	T-C	Hetero	INTERGENIC
SBS	Chr3	28554535	A-T	Homo	INTRON
SBS	Chr3	34813787	A-G	Hetero	INTERGENIC
SBS	Chr3	36345823	C-T	Hetero	STOP_GAINED	OsKitaake03g403200
SBS	Chr4	1212562	G-A	Hetero	INTRON
SBS	Chr4	2727206	C-T	Homo	INTERGENIC
SBS	Chr4	9369371	C-T	Hetero	INTERGENIC
SBS	Chr4	16905023	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	20237526	C-T	Hetero	INTERGENIC
SBS	Chr5	10314321	A-G	Hetero	INTERGENIC
SBS	Chr5	15773181	T-G	Homo	INTERGENIC
SBS	Chr5	17200338	C-A	Homo	INTERGENIC
SBS	Chr5	24701449	C-T	Homo	INTERGENIC
SBS	Chr6	9159679	G-A	Hetero	INTRON
SBS	Chr7	25762538	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g234900
SBS	Chr8	8741451	A-C	Hetero	INTERGENIC
SBS	Chr8	17231729	G-A	Hetero	INTERGENIC
SBS	Chr8	18374295	G-A	Hetero	INTERGENIC
SBS	Chr8	19684613	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g144700
SBS	Chr8	25615949	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g202600
SBS	Chr9	13345678	A-G	Hetero	INTERGENIC
SBS	Chr9	22667294	T-C	Hetero	INTERGENIC
SBS	Chr9	22669253	G-T	Hetero	INTERGENIC
SBS	Chr11	2039643	A-T	Homo	INTRON
SBS	Chr11	8398936	C-T	Hetero	INTERGENIC
SBS	Chr11	20508060	G-A	Hetero	INTERGENIC
SBS	Chr11	27995786	A-G	Hetero	INTERGENIC
SBS	Chr12	4360948	G-A	Hetero	INTERGENIC
SBS	Chr12	9768033	C-T	Hetero	INTERGENIC
SBS	Chr12	10806310	A-G	Hetero	INTERGENIC
SBS	Chr12	11284314	T-C	Homo	INTERGENIC
SBS	Chr12	18814959	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	934482	934484	2
Deletion	Chr8	2112734	2112735	1
Deletion	Chr11	2542001	3123000	580999	73
Deletion	Chr7	4609196	4609200	4
Deletion	Chr6	4872466	4872468	2
Deletion	Chr3	8171509	8171515	6
Deletion	Chr2	9639191	9639194	3
Deletion	Chr10	16148001	16219000	70999	12
Deletion	Chr10	16222001	16570000	347999	36
Deletion	Chr9	19472131	19472134	3
Deletion	Chr7	22613684	22613692	8
Deletion	Chr3	24529001	24575000	45999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	16139947	16819352
Inversion	Chr10	16566345	16819408

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes