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Mutant Information

Mutant Name	FN3857-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3857-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11480966 C-T Hetero INTERGENIC
SBS Chr1 18697840 G-T Hetero INTRON
SBS Chr1 20098845 C-T Hetero INTERGENIC
SBS Chr1 30651750 C-T Hetero INTERGENIC
SBS Chr2 3410207 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g049400
SBS Chr2 8643709 T-G Hetero INTERGENIC
SBS Chr2 31478460 G-C Hetero INTERGENIC
SBS Chr2 31478461 C-A Hetero INTERGENIC
SBS Chr3 8096979 G-A Hetero INTERGENIC
SBS Chr3 26026469 C-T Hetero INTRON
SBS Chr3 26167061 G-A Homo INTERGENIC
SBS Chr3 29958635 G-T Homo SYNONYMOUS_CODING
SBS Chr4 352367 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g002000
SBS Chr4 4011376 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g019500
SBS Chr4 4127345 A-G Hetero INTERGENIC
SBS Chr4 8485495 C-T Hetero INTERGENIC
SBS Chr4 14832591 C-T Hetero INTERGENIC
SBS Chr4 24662339 C-T Homo INTERGENIC
SBS Chr5 4738554 C-G Hetero INTERGENIC
SBS Chr5 6773016 A-G Hetero INTERGENIC
SBS Chr5 14335679 G-A Hetero INTERGENIC
SBS Chr5 18435035 T-G Hetero INTERGENIC
SBS Chr5 18471765 G-C Hetero INTERGENIC
SBS Chr5 18643661 C-A Hetero INTRON
SBS Chr5 20626109 C-A Hetero INTRON
SBS Chr6 2572968 G-A Homo INTRON
SBS Chr6 10389226 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 10389227 C-T Hetero STOP_GAINED OsKitaake06g117600
SBS Chr6 14060423 A-T Hetero INTERGENIC
SBS Chr6 14060424 C-T Hetero INTERGENIC
SBS Chr6 19421469 G-C Hetero INTERGENIC
SBS Chr6 21898429 T-C Hetero INTERGENIC
SBS Chr6 25114062 G-A Hetero INTERGENIC
SBS Chr7 11349003 C-A Hetero INTERGENIC
SBS Chr7 13940527 C-A Hetero INTERGENIC
SBS Chr7 15701913 A-G Homo INTERGENIC
SBS Chr7 18609463 T-C Hetero INTRON
SBS Chr8 13030602 C-T Hetero INTERGENIC
SBS Chr8 18383024 A-T Hetero INTRON
SBS Chr8 21328990 C-T Hetero INTERGENIC
SBS Chr8 23497704 C-T Hetero INTERGENIC
SBS Chr8 28566773 A-G Homo INTERGENIC
SBS Chr9 5179983 G-A Homo INTERGENIC
SBS Chr9 16943471 G-A Hetero INTERGENIC
SBS Chr9 19908554 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g165700
SBS Chr10 10755042 C-T Homo INTERGENIC
SBS Chr10 12989295 G-T Homo SYNONYMOUS_CODING
SBS Chr10 22652303 A-G Hetero INTERGENIC
SBS Chr12 6074427 T-C Homo INTERGENIC
SBS Chr12 7263522 C-T Homo NON_SYNONYMOUS_CODING OsKitaake12g080600
SBS Chr12 19302699 T-C Hetero INTERGENIC
SBS Chr12 21504503 T-C Hetero INTERGENIC
SBS Chr12 26104781 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 4940879 4940904 25
Deletion Chr2 10943876 10943879 3 OsKitaake02g128000
Deletion Chr4 12783057 12783058 1
Deletion Chr11 13298258 13298259 1
Deletion Chr9 16377632 16377639 7
Deletion Chr4 18183308 18183317 9
Deletion Chr11 19828749 19828750 1
Deletion Chr6 20348341 20348344 3
Deletion Chr5 21152090 21152096 6
Deletion Chr9 21964591 21964594 3
Deletion Chr10 22585892 22585905 13 OsKitaake10g186700
Deletion Chr3 24288704 24288705 1 OsKitaake03g259800
Deletion Chr8 26579238 26579243 5 OsKitaake08g214000
Deletion Chr2 27133624 27133636 12
Deletion Chr1 29833001 29845000 11999 2
Deletion Chr2 36612697 36612699 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 8646866 8646869 2
Insertion Chr8 18669453 18669456 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11480966	C-T	Hetero	INTERGENIC
SBS	Chr1	18697840	G-T	Hetero	INTRON
SBS	Chr1	20098845	C-T	Hetero	INTERGENIC
SBS	Chr1	30651750	C-T	Hetero	INTERGENIC
SBS	Chr2	3410207	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g049400
SBS	Chr2	8643709	T-G	Hetero	INTERGENIC
SBS	Chr2	31478460	G-C	Hetero	INTERGENIC
SBS	Chr2	31478461	C-A	Hetero	INTERGENIC
SBS	Chr3	8096979	G-A	Hetero	INTERGENIC
SBS	Chr3	26026469	C-T	Hetero	INTRON
SBS	Chr3	26167061	G-A	Homo	INTERGENIC
SBS	Chr3	29958635	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	352367	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g002000
SBS	Chr4	4011376	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g019500
SBS	Chr4	4127345	A-G	Hetero	INTERGENIC
SBS	Chr4	8485495	C-T	Hetero	INTERGENIC
SBS	Chr4	14832591	C-T	Hetero	INTERGENIC
SBS	Chr4	24662339	C-T	Homo	INTERGENIC
SBS	Chr5	4738554	C-G	Hetero	INTERGENIC
SBS	Chr5	6773016	A-G	Hetero	INTERGENIC
SBS	Chr5	14335679	G-A	Hetero	INTERGENIC
SBS	Chr5	18435035	T-G	Hetero	INTERGENIC
SBS	Chr5	18471765	G-C	Hetero	INTERGENIC
SBS	Chr5	18643661	C-A	Hetero	INTRON
SBS	Chr5	20626109	C-A	Hetero	INTRON
SBS	Chr6	2572968	G-A	Homo	INTRON
SBS	Chr6	10389226	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	10389227	C-T	Hetero	STOP_GAINED	OsKitaake06g117600
SBS	Chr6	14060423	A-T	Hetero	INTERGENIC
SBS	Chr6	14060424	C-T	Hetero	INTERGENIC
SBS	Chr6	19421469	G-C	Hetero	INTERGENIC
SBS	Chr6	21898429	T-C	Hetero	INTERGENIC
SBS	Chr6	25114062	G-A	Hetero	INTERGENIC
SBS	Chr7	11349003	C-A	Hetero	INTERGENIC
SBS	Chr7	13940527	C-A	Hetero	INTERGENIC
SBS	Chr7	15701913	A-G	Homo	INTERGENIC
SBS	Chr7	18609463	T-C	Hetero	INTRON
SBS	Chr8	13030602	C-T	Hetero	INTERGENIC
SBS	Chr8	18383024	A-T	Hetero	INTRON
SBS	Chr8	21328990	C-T	Hetero	INTERGENIC
SBS	Chr8	23497704	C-T	Hetero	INTERGENIC
SBS	Chr8	28566773	A-G	Homo	INTERGENIC
SBS	Chr9	5179983	G-A	Homo	INTERGENIC
SBS	Chr9	16943471	G-A	Hetero	INTERGENIC
SBS	Chr9	19908554	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g165700
SBS	Chr10	10755042	C-T	Homo	INTERGENIC
SBS	Chr10	12989295	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr10	22652303	A-G	Hetero	INTERGENIC
SBS	Chr12	6074427	T-C	Homo	INTERGENIC
SBS	Chr12	7263522	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g080600
SBS	Chr12	19302699	T-C	Hetero	INTERGENIC
SBS	Chr12	21504503	T-C	Hetero	INTERGENIC
SBS	Chr12	26104781	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	4940879	4940904	25
Deletion	Chr2	10943876	10943879	3	OsKitaake02g128000
Deletion	Chr4	12783057	12783058	1
Deletion	Chr11	13298258	13298259	1
Deletion	Chr9	16377632	16377639	7
Deletion	Chr4	18183308	18183317	9
Deletion	Chr11	19828749	19828750	1
Deletion	Chr6	20348341	20348344	3
Deletion	Chr5	21152090	21152096	6
Deletion	Chr9	21964591	21964594	3
Deletion	Chr10	22585892	22585905	13	OsKitaake10g186700
Deletion	Chr3	24288704	24288705	1	OsKitaake03g259800
Deletion	Chr8	26579238	26579243	5	OsKitaake08g214000
Deletion	Chr2	27133624	27133636	12
Deletion	Chr1	29833001	29845000	11999	2
Deletion	Chr2	36612697	36612699	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes