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Mutant Information

Mutant Name	FN3858-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3858-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 479144 G-A Hetero INTERGENIC
SBS Chr1 2323781 G-A Homo INTERGENIC
SBS Chr1 5677304 G-A Hetero INTERGENIC
SBS Chr1 18548857 A-T Hetero INTERGENIC
SBS Chr1 20126404 G-T Hetero INTERGENIC
SBS Chr1 35332466 G-C Hetero INTERGENIC
SBS Chr1 35660345 C-T Homo INTERGENIC
SBS Chr1 37851298 T-C Homo INTERGENIC
SBS Chr2 4706469 G-T Hetero INTRON
SBS Chr2 7426462 C-T Hetero INTERGENIC
SBS Chr2 11809852 G-A Hetero INTRON
SBS Chr2 11917008 A-G Hetero INTERGENIC
SBS Chr2 19409383 G-T Hetero UTR_3_PRIME
SBS Chr3 21737303 C-G Hetero INTERGENIC
SBS Chr3 29211541 C-T Hetero INTERGENIC
SBS Chr3 29264162 C-T Hetero INTERGENIC
SBS Chr3 35884937 G-T Hetero INTERGENIC
SBS Chr4 4548086 A-T Homo INTERGENIC
SBS Chr4 5056445 A-T Homo INTERGENIC
SBS Chr4 9294575 C-T Hetero INTERGENIC
SBS Chr4 9767234 C-T Hetero INTERGENIC
SBS Chr4 11936001 C-T Hetero INTERGENIC
SBS Chr4 22229977 G-A Hetero INTERGENIC
SBS Chr4 22627225 C-T Hetero INTERGENIC
SBS Chr4 32130532 A-T Hetero INTERGENIC
SBS Chr4 36734493 C-A Hetero INTERGENIC
SBS Chr5 1208306 A-G Hetero INTRON
SBS Chr5 1957943 G-T Hetero INTERGENIC
SBS Chr5 12170535 C-T Homo INTERGENIC
SBS Chr5 13636859 C-G Hetero INTERGENIC
SBS Chr5 16383756 C-G Hetero INTERGENIC
SBS Chr5 27667895 A-T Hetero INTRON
SBS Chr5 29693531 A-T Homo INTERGENIC
SBS Chr5 29745418 C-T Homo INTERGENIC
SBS Chr6 5657468 G-A Hetero INTERGENIC
SBS Chr6 7814550 C-T Hetero INTRON
SBS Chr6 10508815 G-A Hetero INTERGENIC
SBS Chr6 19543276 T-C Hetero INTERGENIC
SBS Chr7 9471146 A-G Hetero INTERGENIC
SBS Chr7 9762817 G-A Hetero INTERGENIC
SBS Chr7 10499534 C-T Hetero INTERGENIC
SBS Chr7 12164818 G-A Hetero INTERGENIC
SBS Chr7 17545429 G-A Hetero INTERGENIC
SBS Chr7 19351832 T-A Hetero INTERGENIC
SBS Chr7 27233604 C-A Hetero INTERGENIC
SBS Chr8 13411576 C-T Hetero INTERGENIC
SBS Chr8 20368099 A-T Hetero INTERGENIC
SBS Chr8 24632901 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g191900
SBS Chr9 3672151 T-G Hetero INTRON
SBS Chr9 13343927 T-C Hetero INTERGENIC
SBS Chr9 14578111 G-A Hetero INTRON
SBS Chr9 15605043 C-T Hetero INTERGENIC
SBS Chr10 4860380 T-C Homo INTERGENIC
SBS Chr10 14417406 T-C Hetero INTERGENIC
SBS Chr10 20598392 C-A Hetero INTERGENIC
SBS Chr10 20873113 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g160600
SBS Chr11 1755153 G-A Hetero INTERGENIC
SBS Chr11 2825875 G-A Hetero INTERGENIC
SBS Chr11 10613363 C-A Hetero INTERGENIC
SBS Chr11 17380384 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g136100
SBS Chr11 18782257 T-C Hetero INTRON
SBS Chr11 26821561 G-T Hetero UTR_3_PRIME
SBS Chr12 9448832 G-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 433521 433523 2
Deletion Chr1 1871059 1871062 3
Deletion Chr3 3053841 3053863 22
Deletion Chr4 5085752 5085755 3
Deletion Chr6 8647001 8707000 59999
Deletion Chr6 8713001 8817000 103999 4
Deletion Chr8 9517532 9517533 1
Deletion Chr9 13062330 13062333 3
Deletion Chr12 15423358 15423359 1
Deletion Chr12 24888147 24888164 17
Deletion Chr5 29460223 29460225 2
Deletion Chr4 31214001 31221000 6999
Deletion Chr2 34965706 34965707 1 OsKitaake02g365100
Deletion Chr3 35427102 35427103 1
Deletion Chr4 35892523 35892527 4
Deletion Chr1 39589001 39774000 184999 28

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8641744 8641747 2
Insertion Chr2 12799424 12799427 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 8770867 9363906 OsKitaake09g056600
Inversion Chr9 8770878 9363906 OsKitaake09g056600
Inversion Chr4 23550288 23910152 OsKitaake04g147500
Inversion Chr1 39441012 39571163 OsKitaake01g427400
Inversion Chr1 39441026 39571172 OsKitaake01g427400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 7956529 Chr3 3359490 OsKitaake03g047632
Translocation Chr6 7957672 Chr3 3359479 OsKitaake03g047632

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	479144	G-A	Hetero	INTERGENIC
SBS	Chr1	2323781	G-A	Homo	INTERGENIC
SBS	Chr1	5677304	G-A	Hetero	INTERGENIC
SBS	Chr1	18548857	A-T	Hetero	INTERGENIC
SBS	Chr1	20126404	G-T	Hetero	INTERGENIC
SBS	Chr1	35332466	G-C	Hetero	INTERGENIC
SBS	Chr1	35660345	C-T	Homo	INTERGENIC
SBS	Chr1	37851298	T-C	Homo	INTERGENIC
SBS	Chr2	4706469	G-T	Hetero	INTRON
SBS	Chr2	7426462	C-T	Hetero	INTERGENIC
SBS	Chr2	11809852	G-A	Hetero	INTRON
SBS	Chr2	11917008	A-G	Hetero	INTERGENIC
SBS	Chr2	19409383	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	21737303	C-G	Hetero	INTERGENIC
SBS	Chr3	29211541	C-T	Hetero	INTERGENIC
SBS	Chr3	29264162	C-T	Hetero	INTERGENIC
SBS	Chr3	35884937	G-T	Hetero	INTERGENIC
SBS	Chr4	4548086	A-T	Homo	INTERGENIC
SBS	Chr4	5056445	A-T	Homo	INTERGENIC
SBS	Chr4	9294575	C-T	Hetero	INTERGENIC
SBS	Chr4	9767234	C-T	Hetero	INTERGENIC
SBS	Chr4	11936001	C-T	Hetero	INTERGENIC
SBS	Chr4	22229977	G-A	Hetero	INTERGENIC
SBS	Chr4	22627225	C-T	Hetero	INTERGENIC
SBS	Chr4	32130532	A-T	Hetero	INTERGENIC
SBS	Chr4	36734493	C-A	Hetero	INTERGENIC
SBS	Chr5	1208306	A-G	Hetero	INTRON
SBS	Chr5	1957943	G-T	Hetero	INTERGENIC
SBS	Chr5	12170535	C-T	Homo	INTERGENIC
SBS	Chr5	13636859	C-G	Hetero	INTERGENIC
SBS	Chr5	16383756	C-G	Hetero	INTERGENIC
SBS	Chr5	27667895	A-T	Hetero	INTRON
SBS	Chr5	29693531	A-T	Homo	INTERGENIC
SBS	Chr5	29745418	C-T	Homo	INTERGENIC
SBS	Chr6	5657468	G-A	Hetero	INTERGENIC
SBS	Chr6	7814550	C-T	Hetero	INTRON
SBS	Chr6	10508815	G-A	Hetero	INTERGENIC
SBS	Chr6	19543276	T-C	Hetero	INTERGENIC
SBS	Chr7	9471146	A-G	Hetero	INTERGENIC
SBS	Chr7	9762817	G-A	Hetero	INTERGENIC
SBS	Chr7	10499534	C-T	Hetero	INTERGENIC
SBS	Chr7	12164818	G-A	Hetero	INTERGENIC
SBS	Chr7	17545429	G-A	Hetero	INTERGENIC
SBS	Chr7	19351832	T-A	Hetero	INTERGENIC
SBS	Chr7	27233604	C-A	Hetero	INTERGENIC
SBS	Chr8	13411576	C-T	Hetero	INTERGENIC
SBS	Chr8	20368099	A-T	Hetero	INTERGENIC
SBS	Chr8	24632901	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g191900
SBS	Chr9	3672151	T-G	Hetero	INTRON
SBS	Chr9	13343927	T-C	Hetero	INTERGENIC
SBS	Chr9	14578111	G-A	Hetero	INTRON
SBS	Chr9	15605043	C-T	Hetero	INTERGENIC
SBS	Chr10	4860380	T-C	Homo	INTERGENIC
SBS	Chr10	14417406	T-C	Hetero	INTERGENIC
SBS	Chr10	20598392	C-A	Hetero	INTERGENIC
SBS	Chr10	20873113	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g160600
SBS	Chr11	1755153	G-A	Hetero	INTERGENIC
SBS	Chr11	2825875	G-A	Hetero	INTERGENIC
SBS	Chr11	10613363	C-A	Hetero	INTERGENIC
SBS	Chr11	17380384	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g136100
SBS	Chr11	18782257	T-C	Hetero	INTRON
SBS	Chr11	26821561	G-T	Hetero	UTR_3_PRIME
SBS	Chr12	9448832	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	433521	433523	2
Deletion	Chr1	1871059	1871062	3
Deletion	Chr3	3053841	3053863	22
Deletion	Chr4	5085752	5085755	3
Deletion	Chr6	8647001	8707000	59999
Deletion	Chr6	8713001	8817000	103999	4
Deletion	Chr8	9517532	9517533	1
Deletion	Chr9	13062330	13062333	3
Deletion	Chr12	15423358	15423359	1
Deletion	Chr12	24888147	24888164	17
Deletion	Chr5	29460223	29460225	2
Deletion	Chr4	31214001	31221000	6999
Deletion	Chr2	34965706	34965707	1	OsKitaake02g365100
Deletion	Chr3	35427102	35427103	1
Deletion	Chr4	35892523	35892527	4
Deletion	Chr1	39589001	39774000	184999	28

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8770867	9363906	OsKitaake09g056600
Inversion	Chr9	8770878	9363906	OsKitaake09g056600
Inversion	Chr4	23550288	23910152	OsKitaake04g147500
Inversion	Chr1	39441012	39571163	OsKitaake01g427400
Inversion	Chr1	39441026	39571172	OsKitaake01g427400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes